miRNA display CGI


Results 81 - 100 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29516 5' -58.1 NC_006151.1 + 84389 0.71 0.554748
Target:  5'- cGCGGGGAcGGGCGGGGAgCG-GGuGGGc -3'
miRNA:   3'- cUGCUCCU-CCUGCUCCU-GCuCCuCCU- -5'
29516 5' -58.1 NC_006151.1 + 16134 0.71 0.554748
Target:  5'- gGugGAGGgagaggggaguGGGAUGGGGugGAgacgguGGAGGGa -3'
miRNA:   3'- -CugCUCC-----------UCCUGCUCCugCU------CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 9728 0.71 0.571534
Target:  5'- --gGAGGAGaGGgGAGGaaaaaaagucuagaGCGGGGAGGAg -3'
miRNA:   3'- cugCUCCUC-CUgCUCC--------------UGCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 32843 0.71 0.564606
Target:  5'- --aGAGGGGGgccgGCGGGGAUGGGGAaGAa -3'
miRNA:   3'- cugCUCCUCC----UGCUCCUGCUCCUcCU- -5'
29516 5' -58.1 NC_006151.1 + 16484 0.71 0.554748
Target:  5'- gGugGAGGgagaggggaguGGGAUGGGGugGAgacgguGGAGGGa -3'
miRNA:   3'- -CugCUCC-----------UCCUGCUCCugCU------CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 16414 0.71 0.554748
Target:  5'- gGugGAGGgagaggggaguGGGAUGGGGugGAgacgguGGAGGGa -3'
miRNA:   3'- -CugCUCC-----------UCCUGCUCCugCU------CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 16344 0.71 0.554748
Target:  5'- gGugGAGGgagaggggaguGGGAUGGGGugGAgacgguGGAGGGa -3'
miRNA:   3'- -CugCUCC-----------UCCUGCUCCugCU------CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 16274 0.71 0.554748
Target:  5'- gGugGAGGgagaggggaguGGGAUGGGGugGAgacgguGGAGGGa -3'
miRNA:   3'- -CugCUCC-----------UCCUGCUCCugCU------CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 16204 0.71 0.554748
Target:  5'- gGugGAGGgagaggggaguGGGAUGGGGugGAgacgguGGAGGGa -3'
miRNA:   3'- -CugCUCC-----------UCCUGCUCCugCU------CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 30409 0.72 0.468939
Target:  5'- cGACGGGGAgaGGAaggaGGGGAgGAcGGAGGGc -3'
miRNA:   3'- -CUGCUCCU--CCUg---CUCCUgCU-CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 8090 0.72 0.478158
Target:  5'- uGGCGGGGcGuGGCaGAGGGgGAGGGGGGg -3'
miRNA:   3'- -CUGCUCCuC-CUG-CUCCUgCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 33472 0.72 0.478158
Target:  5'- aGGCGAGaGAGGAgGAGaAgGAGGAGGc -3'
miRNA:   3'- -CUGCUC-CUCCUgCUCcUgCUCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 66924 0.72 0.487466
Target:  5'- cACGAuGGAGG-CGGGGGCGAGGgcaaAGGc -3'
miRNA:   3'- cUGCU-CCUCCuGCUCCUGCUCC----UCCu -5'
29516 5' -58.1 NC_006151.1 + 40203 0.72 0.487466
Target:  5'- cGACGAGGAGGcCGAGGACGccGGc-- -3'
miRNA:   3'- -CUGCUCCUCCuGCUCCUGCucCUccu -5'
29516 5' -58.1 NC_006151.1 + 27372 0.72 0.506331
Target:  5'- gGGCGGGucGAcGGGCGAGaacGGCGGGGAGGGc -3'
miRNA:   3'- -CUGCUC--CU-CCUGCUC---CUGCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 14483 0.72 0.506331
Target:  5'- gGGCG-GGuGGGCGGGGGuCG-GGAGGGa -3'
miRNA:   3'- -CUGCuCCuCCUGCUCCU-GCuCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 27489 0.72 0.506331
Target:  5'- cGGCGGGGugguGGGaACGGGGugGgAGGGGGu -3'
miRNA:   3'- -CUGCUCC----UCC-UGCUCCugC-UCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 44339 0.72 0.506331
Target:  5'- aGAgGAGGGccgcGGACGgguGGGACGGcGGGGGAg -3'
miRNA:   3'- -CUgCUCCU----CCUGC---UCCUGCU-CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 82686 0.72 0.515881
Target:  5'- gGGCGAGGGcGGcggcccccGCGAGGGCcAGGAGGc -3'
miRNA:   3'- -CUGCUCCU-CC--------UGCUCCUGcUCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 8471 0.72 0.468022
Target:  5'- --gGAGGAcggauggucggucGGACGGGGcggGCGGGGAGGGu -3'
miRNA:   3'- cugCUCCU-------------CCUGCUCC---UGCUCCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.