miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29516 5' -58.1 NC_006151.1 + 33076 0.79 0.210928
Target:  5'- aGACGGaGGGGGCGAGGGCGGgcgguGGAGGGg -3'
miRNA:   3'- -CUGCUcCUCCUGCUCCUGCU-----CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 49750 0.79 0.210928
Target:  5'- --aGAGGGGGACGuGGaagacgGCGAGGAGGGg -3'
miRNA:   3'- cugCUCCUCCUGCuCC------UGCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 15862 0.78 0.221347
Target:  5'- gGGCGAGGAGGGCGggaAGGACGccgcccgccGGGGGAc -3'
miRNA:   3'- -CUGCUCCUCCUGC---UCCUGCu--------CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 3509 0.78 0.226719
Target:  5'- ----cGGAGGAgGAGGAgGAGGAGGAc -3'
miRNA:   3'- cugcuCCUCCUgCUCCUgCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 11798 0.78 0.226719
Target:  5'- gGGCGAGaGGGGCGGGGugGGGuGGGGGg -3'
miRNA:   3'- -CUGCUCcUCCUGCUCCugCUC-CUCCU- -5'
29516 5' -58.1 NC_006151.1 + 9518 0.78 0.232201
Target:  5'- -gUGGGGaAGGAagaGGGGACGGGGGGGAa -3'
miRNA:   3'- cuGCUCC-UCCUg--CUCCUGCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 49519 0.78 0.232201
Target:  5'- -cCGGcGGAGGACGAGGAgGgGGGAGGGg -3'
miRNA:   3'- cuGCU-CCUCCUGCUCCUgC-UCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 78368 0.77 0.249319
Target:  5'- cGACGAcGGAGGAgaAGGGgGAGGAGGGg -3'
miRNA:   3'- -CUGCU-CCUCCUgcUCCUgCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 11727 0.77 0.261302
Target:  5'- --aGAGGGGGgaGCGGGGGUGAGGGGGAg -3'
miRNA:   3'- cugCUCCUCC--UGCUCCUGCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 44465 0.77 0.273749
Target:  5'- cGAUGGGGGGuGAgGGuGGACGGGGGGGGu -3'
miRNA:   3'- -CUGCUCCUC-CUgCU-CCUGCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 30021 0.76 0.286667
Target:  5'- aGGCaggaGGGGGGAgGAGGGgGGGGAGGAg -3'
miRNA:   3'- -CUGc---UCCUCCUgCUCCUgCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 30852 0.76 0.293304
Target:  5'- aGCGAGGAGGACuGGcGGCGGcggcGGAGGAg -3'
miRNA:   3'- cUGCUCCUCCUGcUC-CUGCU----CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 29673 0.76 0.30006
Target:  5'- gGGgGGGGGGGGCGGGGugGGGGAu-- -3'
miRNA:   3'- -CUgCUCCUCCUGCUCCugCUCCUccu -5'
29516 5' -58.1 NC_006151.1 + 96726 0.76 0.306936
Target:  5'- gGACGAGGAGGcgGCGGGcgcGACGAcGGAGGc -3'
miRNA:   3'- -CUGCUCCUCC--UGCUC---CUGCU-CCUCCu -5'
29516 5' -58.1 NC_006151.1 + 31657 0.75 0.328283
Target:  5'- cGCGGGGAGGGagGAGGGCGgAGGaAGGGc -3'
miRNA:   3'- cUGCUCCUCCUg-CUCCUGC-UCC-UCCU- -5'
29516 5' -58.1 NC_006151.1 + 33330 0.75 0.335639
Target:  5'- gGAC-AGG-GGGCGGGGGCGGGGAGaGGa -3'
miRNA:   3'- -CUGcUCCuCCUGCUCCUGCUCCUC-CU- -5'
29516 5' -58.1 NC_006151.1 + 26281 0.75 0.343115
Target:  5'- cGAUGGGGcGGACGgugGGGugGGGGGGGu -3'
miRNA:   3'- -CUGCUCCuCCUGC---UCCugCUCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 33033 0.75 0.350709
Target:  5'- -cCGAGGAcGACGGGGA-GGGGGGGAu -3'
miRNA:   3'- cuGCUCCUcCUGCUCCUgCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 29445 0.75 0.350709
Target:  5'- cGGCGGGGAGa--GGGGACGcGGAGGGa -3'
miRNA:   3'- -CUGCUCCUCcugCUCCUGCuCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 29348 0.75 0.350709
Target:  5'- aGGgGGGGGGGAgaGGGGGCGGGGAGcGGg -3'
miRNA:   3'- -CUgCUCCUCCUg-CUCCUGCUCCUC-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.