miRNA display CGI


Results 41 - 60 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29516 5' -58.1 NC_006151.1 + 49816 0.75 0.358423
Target:  5'- aGACGGGGGGGACGAagGGACGAcGAcGGc -3'
miRNA:   3'- -CUGCUCCUCCUGCU--CCUGCUcCU-CCu -5'
29516 5' -58.1 NC_006151.1 + 38606 0.75 0.366254
Target:  5'- cGGCGAGGAGGACGAGGggcucuccgGCGcGGcccuccgcgGGGAc -3'
miRNA:   3'- -CUGCUCCUCCUGCUCC---------UGCuCC---------UCCU- -5'
29516 5' -58.1 NC_006151.1 + 5833 0.74 0.374202
Target:  5'- gGAgGAGGAGGcCGGGGAggcugcgGAGGGGGAc -3'
miRNA:   3'- -CUgCUCCUCCuGCUCCUg------CUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 42875 0.74 0.374202
Target:  5'- -uCGAGGGGGccGCGAGGGaGAGGGGGu -3'
miRNA:   3'- cuGCUCCUCC--UGCUCCUgCUCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 24001 0.74 0.382267
Target:  5'- cACGAGGAGccCGAGGGCGAGGAu-- -3'
miRNA:   3'- cUGCUCCUCcuGCUCCUGCUCCUccu -5'
29516 5' -58.1 NC_006151.1 + 22204 0.74 0.407144
Target:  5'- cGCGGGGccGACGaAGGGCGAGG-GGAc -3'
miRNA:   3'- cUGCUCCucCUGC-UCCUGCUCCuCCU- -5'
29516 5' -58.1 NC_006151.1 + 21061 0.74 0.415659
Target:  5'- cGCGGGGucAGGGCGgccagggucagGGcGGCGAGGAGGAg -3'
miRNA:   3'- cUGCUCC--UCCUGC-----------UC-CUGCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 34396 0.73 0.424282
Target:  5'- --aGAGG-GGugGGGGA-GAGGAGGGg -3'
miRNA:   3'- cugCUCCuCCugCUCCUgCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 32121 0.73 0.433012
Target:  5'- --aGAGGGGGACGGGGGgagagaGAGcGAGGGg -3'
miRNA:   3'- cugCUCCUCCUGCUCCUg-----CUC-CUCCU- -5'
29516 5' -58.1 NC_006151.1 + 8384 0.73 0.433012
Target:  5'- -cCGGGGGGGuCcGGGAUGGGGGGGGu -3'
miRNA:   3'- cuGCUCCUCCuGcUCCUGCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 1787 0.73 0.433012
Target:  5'- aGAgGAGGAGGGCcaccGGGcCGGGGAGGc -3'
miRNA:   3'- -CUgCUCCUCCUGc---UCCuGCUCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 31410 0.73 0.441845
Target:  5'- gGGCGAGG-GGAaGGGGAagGGGGGGGAc -3'
miRNA:   3'- -CUGCUCCuCCUgCUCCUg-CUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 5040 0.73 0.441845
Target:  5'- -cCGGGGAGGccGCGGcGGAgGAGGAGGc -3'
miRNA:   3'- cuGCUCCUCC--UGCU-CCUgCUCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 9610 0.73 0.441845
Target:  5'- aACGGGGAagGGGCcGGcGGCGAGGGGGGa -3'
miRNA:   3'- cUGCUCCU--CCUGcUC-CUGCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 29632 0.73 0.450779
Target:  5'- aGugGGGGAauugggGGugGGGGAaauggGGGGAGGAg -3'
miRNA:   3'- -CugCUCCU------CCugCUCCUg----CUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 89168 0.73 0.450779
Target:  5'- gGGCGAGGcGGGcGCGGGGGuCGGGGGcGGAg -3'
miRNA:   3'- -CUGCUCC-UCC-UGCUCCU-GCUCCU-CCU- -5'
29516 5' -58.1 NC_006151.1 + 142527 0.73 0.459811
Target:  5'- aACGAGGGGGuuGGGGgaaaggggggaACGAGGGGGu -3'
miRNA:   3'- cUGCUCCUCCugCUCC-----------UGCUCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 142475 0.73 0.459811
Target:  5'- aACGAGGGGGuuGGGGgaaaggggggaACGAGGGGGu -3'
miRNA:   3'- cUGCUCCUCCugCUCC-----------UGCUCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 142423 0.73 0.459811
Target:  5'- aACGAGGGGGuuGGGGgaaaggggggaACGAGGGGGu -3'
miRNA:   3'- cUGCUCCUCCugCUCC-----------UGCUCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 142371 0.73 0.459811
Target:  5'- aACGAGGGGGuuGGGGgaaaggggggaACGAGGGGGu -3'
miRNA:   3'- cUGCUCCUCCugCUCC-----------UGCUCCUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.