Results 81 - 100 of 161 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29516 | 5' | -58.1 | NC_006151.1 | + | 16725 | 0.71 | 0.554748 |
Target: 5'- aGCGGGGGGG--GGGGAaGGGGGGGAa -3' miRNA: 3'- cUGCUCCUCCugCUCCUgCUCCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 43704 | 0.71 | 0.554748 |
Target: 5'- cGACGGGGAGaGGaaccgaaaaauCGGGGACGGuGGGGGc -3' miRNA: 3'- -CUGCUCCUC-CU-----------GCUCCUGCU-CCUCCu -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 67442 | 0.71 | 0.554748 |
Target: 5'- -uCGGGGAuGGCGcGGGCGGGGGGGu -3' miRNA: 3'- cuGCUCCUcCUGCuCCUGCUCCUCCu -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 16134 | 0.71 | 0.554748 |
Target: 5'- gGugGAGGgagaggggaguGGGAUGGGGugGAgacgguGGAGGGa -3' miRNA: 3'- -CugCUCC-----------UCCUGCUCCugCU------CCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 16204 | 0.71 | 0.554748 |
Target: 5'- gGugGAGGgagaggggaguGGGAUGGGGugGAgacgguGGAGGGa -3' miRNA: 3'- -CugCUCC-----------UCCUGCUCCugCU------CCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 16274 | 0.71 | 0.554748 |
Target: 5'- gGugGAGGgagaggggaguGGGAUGGGGugGAgacgguGGAGGGa -3' miRNA: 3'- -CugCUCC-----------UCCUGCUCCugCU------CCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 16414 | 0.71 | 0.554748 |
Target: 5'- gGugGAGGgagaggggaguGGGAUGGGGugGAgacgguGGAGGGa -3' miRNA: 3'- -CugCUCC-----------UCCUGCUCCugCU------CCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 32843 | 0.71 | 0.564606 |
Target: 5'- --aGAGGGGGgccgGCGGGGAUGGGGAaGAa -3' miRNA: 3'- cugCUCCUCC----UGCUCCUGCUCCUcCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 9728 | 0.71 | 0.571534 |
Target: 5'- --gGAGGAGaGGgGAGGaaaaaaagucuagaGCGGGGAGGAg -3' miRNA: 3'- cugCUCCUC-CUgCUCC--------------UGCUCCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 8213 | 0.7 | 0.584453 |
Target: 5'- aGACGAaGAGGGCcGGGuccccuucccgGCGGGGAGGGc -3' miRNA: 3'- -CUGCUcCUCCUGcUCC-----------UGCUCCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 66896 | 0.7 | 0.584453 |
Target: 5'- cGCGccGGAGGACGccGcCGAGGAGGGc -3' miRNA: 3'- cUGCu-CCUCCUGCucCuGCUCCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 30166 | 0.7 | 0.584453 |
Target: 5'- aGCGcGGGAGGGCgggugagaGAGGuCGGGGAGGc -3' miRNA: 3'- cUGC-UCCUCCUG--------CUCCuGCUCCUCCu -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 110365 | 0.7 | 0.584453 |
Target: 5'- aGACuuGGAGGugGGGaGAUcGGGGGGAa -3' miRNA: 3'- -CUGcuCCUCCugCUC-CUGcUCCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 27306 | 0.7 | 0.584453 |
Target: 5'- gGGCGuGGGGGuCGAGG-CGGGGgacGGGGg -3' miRNA: 3'- -CUGCuCCUCCuGCUCCuGCUCC---UCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 36202 | 0.7 | 0.584453 |
Target: 5'- gGGCGAGaucguggugcuaGAcGACGAaGACGAGGAGGAg -3' miRNA: 3'- -CUGCUC------------CUcCUGCUcCUGCUCCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 23007 | 0.7 | 0.594429 |
Target: 5'- cGCGGGuGGGGGCGcggGGGugGuGGAGGc -3' miRNA: 3'- cUGCUC-CUCCUGC---UCCugCuCCUCCu -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 139535 | 0.7 | 0.594429 |
Target: 5'- aGCGAGGcguccAGGuCGGGGAgCGAGGAGcGGc -3' miRNA: 3'- cUGCUCC-----UCCuGCUCCU-GCUCCUC-CU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 100800 | 0.7 | 0.614454 |
Target: 5'- cACGAGGuggcGGGCGAcGGCGAGGcGGGc -3' miRNA: 3'- cUGCUCCu---CCUGCUcCUGCUCCuCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 137589 | 0.7 | 0.614454 |
Target: 5'- cGACGAGGucggggucGGGAuCGGGGGCGcGGGcgGGGAc -3' miRNA: 3'- -CUGCUCC--------UCCU-GCUCCUGC-UCC--UCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 110480 | 0.7 | 0.62449 |
Target: 5'- -uUGGGGGGGAUugGGGGACuuGGGGGGAu -3' miRNA: 3'- cuGCUCCUCCUG--CUCCUGc-UCCUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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