Results 21 - 40 of 161 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29516 | 5' | -58.1 | NC_006151.1 | + | 10223 | 0.69 | 0.6546 |
Target: 5'- aGGCGGcugcGGAcgcGGAgGGGGGCGAGG-GGAc -3' miRNA: 3'- -CUGCU----CCU---CCUgCUCCUGCUCCuCCU- -5' |
|||||||
29516 | 5' | -58.1 | NC_006151.1 | + | 10354 | 0.71 | 0.525502 |
Target: 5'- gGACGcGGGAGGGgaGGGGAgggaGGGGAGGGg -3' miRNA: 3'- -CUGC-UCCUCCUg-CUCCUg---CUCCUCCU- -5' |
|||||||
29516 | 5' | -58.1 | NC_006151.1 | + | 10443 | 0.83 | 0.118779 |
Target: 5'- cGGCGGGGAGG--GAGGAgGAGGAGGAc -3' miRNA: 3'- -CUGCUCCUCCugCUCCUgCUCCUCCU- -5' |
|||||||
29516 | 5' | -58.1 | NC_006151.1 | + | 11727 | 0.77 | 0.261302 |
Target: 5'- --aGAGGGGGgaGCGGGGGUGAGGGGGAg -3' miRNA: 3'- cugCUCCUCC--UGCUCCUGCUCCUCCU- -5' |
|||||||
29516 | 5' | -58.1 | NC_006151.1 | + | 11798 | 0.78 | 0.226719 |
Target: 5'- gGGCGAGaGGGGCGGGGugGGGuGGGGGg -3' miRNA: 3'- -CUGCUCcUCCUGCUCCugCUC-CUCCU- -5' |
|||||||
29516 | 5' | -58.1 | NC_006151.1 | + | 12355 | 0.66 | 0.832306 |
Target: 5'- gGGCGGGGAGcGCGAGcgggagaagguuGGCGAaGGAGaGAg -3' miRNA: 3'- -CUGCUCCUCcUGCUC------------CUGCU-CCUC-CU- -5' |
|||||||
29516 | 5' | -58.1 | NC_006151.1 | + | 14483 | 0.72 | 0.506331 |
Target: 5'- gGGCG-GGuGGGCGGGGGuCG-GGAGGGa -3' miRNA: 3'- -CUGCuCCuCCUGCUCCU-GCuCCUCCU- -5' |
|||||||
29516 | 5' | -58.1 | NC_006151.1 | + | 15376 | 0.66 | 0.832306 |
Target: 5'- uGGgGAGGAGugcGACGucGACGAGGAcGAc -3' miRNA: 3'- -CUgCUCCUC---CUGCucCUGCUCCUcCU- -5' |
|||||||
29516 | 5' | -58.1 | NC_006151.1 | + | 15466 | 0.96 | 0.014928 |
Target: 5'- cGACGGGGAGGACGAGGACGAaGAGGAa -3' miRNA: 3'- -CUGCUCCUCCUGCUCCUGCUcCUCCU- -5' |
|||||||
29516 | 5' | -58.1 | NC_006151.1 | + | 15493 | 0.94 | 0.020103 |
Target: 5'- aGACGGGGAGGAggaagaCGAGGACGAGGAGGGg -3' miRNA: 3'- -CUGCUCCUCCU------GCUCCUGCUCCUCCU- -5' |
|||||||
29516 | 5' | -58.1 | NC_006151.1 | + | 15538 | 0.87 | 0.065265 |
Target: 5'- aGACGAGGAGGAagaggaaGGGGACGAGGAcGGGg -3' miRNA: 3'- -CUGCUCCUCCUg------CUCCUGCUCCU-CCU- -5' |
|||||||
29516 | 5' | -58.1 | NC_006151.1 | + | 15584 | 0.92 | 0.027047 |
Target: 5'- uACGAGGAGGACGAcgaggccgaGGACGAGGAGGAc -3' miRNA: 3'- cUGCUCCUCCUGCU---------CCUGCUCCUCCU- -5' |
|||||||
29516 | 5' | -58.1 | NC_006151.1 | + | 15617 | 0.8 | 0.181729 |
Target: 5'- nACGAGGAGGACGGGGACGAcuuugacGGGGc- -3' miRNA: 3'- cUGCUCCUCCUGCUCCUGCU-------CCUCcu -5' |
|||||||
29516 | 5' | -58.1 | NC_006151.1 | + | 15742 | 0.81 | 0.162538 |
Target: 5'- aGACGAGGAcgaagaugaagacgaGGACGAGGACGAuGGAGa- -3' miRNA: 3'- -CUGCUCCU---------------CCUGCUCCUGCU-CCUCcu -5' |
|||||||
29516 | 5' | -58.1 | NC_006151.1 | + | 15784 | 0.96 | 0.01414 |
Target: 5'- gGACGAGGAGGACGAGGAaGGGGAGGAc -3' miRNA: 3'- -CUGCUCCUCCUGCUCCUgCUCCUCCU- -5' |
|||||||
29516 | 5' | -58.1 | NC_006151.1 | + | 15862 | 0.78 | 0.221347 |
Target: 5'- gGGCGAGGAGGGCGggaAGGACGccgcccgccGGGGGAc -3' miRNA: 3'- -CUGCUCCUCCUGC---UCCUGCu--------CCUCCU- -5' |
|||||||
29516 | 5' | -58.1 | NC_006151.1 | + | 16134 | 0.71 | 0.554748 |
Target: 5'- gGugGAGGgagaggggaguGGGAUGGGGugGAgacgguGGAGGGa -3' miRNA: 3'- -CugCUCC-----------UCCUGCUCCugCU------CCUCCU- -5' |
|||||||
29516 | 5' | -58.1 | NC_006151.1 | + | 16204 | 0.71 | 0.554748 |
Target: 5'- gGugGAGGgagaggggaguGGGAUGGGGugGAgacgguGGAGGGa -3' miRNA: 3'- -CugCUCC-----------UCCUGCUCCugCU------CCUCCU- -5' |
|||||||
29516 | 5' | -58.1 | NC_006151.1 | + | 16274 | 0.71 | 0.554748 |
Target: 5'- gGugGAGGgagaggggaguGGGAUGGGGugGAgacgguGGAGGGa -3' miRNA: 3'- -CugCUCC-----------UCCUGCUCCugCU------CCUCCU- -5' |
|||||||
29516 | 5' | -58.1 | NC_006151.1 | + | 16344 | 0.71 | 0.554748 |
Target: 5'- gGugGAGGgagaggggaguGGGAUGGGGugGAgacgguGGAGGGa -3' miRNA: 3'- -CugCUCC-----------UCCUGCUCCugCU------CCUCCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home