miRNA display CGI


Results 41 - 60 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29516 5' -58.1 NC_006151.1 + 16414 0.71 0.554748
Target:  5'- gGugGAGGgagaggggaguGGGAUGGGGugGAgacgguGGAGGGa -3'
miRNA:   3'- -CugCUCC-----------UCCUGCUCCugCU------CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 16484 0.71 0.554748
Target:  5'- gGugGAGGgagaggggaguGGGAUGGGGugGAgacgguGGAGGGa -3'
miRNA:   3'- -CugCUCC-----------UCCUGCUCCugCU------CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 16590 0.68 0.743102
Target:  5'- gGugGGGGGGGAgucCGGGGGaguccGGGGGAg -3'
miRNA:   3'- -CugCUCCUCCU---GCUCCUgcu--CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 16725 0.71 0.554748
Target:  5'- aGCGGGGGGG--GGGGAaGGGGGGGAa -3'
miRNA:   3'- cUGCUCCUCCugCUCCUgCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 16749 0.66 0.840391
Target:  5'- --aGGGGGGaGAUGGGGGagggaGAGaGAGGAc -3'
miRNA:   3'- cugCUCCUC-CUGCUCCUg----CUC-CUCCU- -5'
29516 5' -58.1 NC_006151.1 + 16829 0.67 0.789405
Target:  5'- -uUGGGGGGuGugGGGGAUGcGGAGaGAu -3'
miRNA:   3'- cuGCUCCUC-CugCUCCUGCuCCUC-CU- -5'
29516 5' -58.1 NC_006151.1 + 21061 0.74 0.415659
Target:  5'- cGCGGGGucAGGGCGgccagggucagGGcGGCGAGGAGGAg -3'
miRNA:   3'- cUGCUCC--UCCUGC-----------UC-CUGCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 22204 0.74 0.407144
Target:  5'- cGCGGGGccGACGaAGGGCGAGG-GGAc -3'
miRNA:   3'- cUGCUCCucCUGC-UCCUGCUCCuCCU- -5'
29516 5' -58.1 NC_006151.1 + 23007 0.7 0.594429
Target:  5'- cGCGGGuGGGGGCGcggGGGugGuGGAGGc -3'
miRNA:   3'- cUGCUC-CUCCUGC---UCCugCuCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 24001 0.74 0.382267
Target:  5'- cACGAGGAGccCGAGGGCGAGGAu-- -3'
miRNA:   3'- cUGCUCCUCcuGCUCCUGCUCCUccu -5'
29516 5' -58.1 NC_006151.1 + 26281 0.75 0.343115
Target:  5'- cGAUGGGGcGGACGgugGGGugGGGGGGGu -3'
miRNA:   3'- -CUGCUCCuCCUGC---UCCugCUCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 27306 0.7 0.584453
Target:  5'- gGGCGuGGGGGuCGAGG-CGGGGgacGGGGg -3'
miRNA:   3'- -CUGCuCCUCCuGCUCCuGCUCC---UCCU- -5'
29516 5' -58.1 NC_006151.1 + 27372 0.72 0.506331
Target:  5'- gGGCGGGucGAcGGGCGAGaacGGCGGGGAGGGc -3'
miRNA:   3'- -CUGCUC--CU-CCUGCUC---CUGCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 27450 0.66 0.824047
Target:  5'- gGACGcGGuGGGuCGGGGGCGGgcggucgagcGGGGGGu -3'
miRNA:   3'- -CUGCuCCuCCU-GCUCCUGCU----------CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 27489 0.72 0.506331
Target:  5'- cGGCGGGGugguGGGaACGGGGugGgAGGGGGu -3'
miRNA:   3'- -CUGCUCC----UCC-UGCUCCugC-UCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 27532 0.8 0.164987
Target:  5'- cGugGGGGGGGGgGGGGGgGGGGGGGGg -3'
miRNA:   3'- -CugCUCCUCCUgCUCCUgCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 27558 0.67 0.780383
Target:  5'- gGGCuGGGcuGGGACGGGGGCcGGGuGGGu -3'
miRNA:   3'- -CUGcUCC--UCCUGCUCCUGcUCCuCCU- -5'
29516 5' -58.1 NC_006151.1 + 27817 0.67 0.789405
Target:  5'- --gGGGGAGGG-GAGG--GGGGAGGAg -3'
miRNA:   3'- cugCUCCUCCUgCUCCugCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 27957 0.83 0.118779
Target:  5'- -gUGGGGAGGGaggGGGGACGGGGAGGAg -3'
miRNA:   3'- cuGCUCCUCCUg--CUCCUGCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 29348 0.75 0.350709
Target:  5'- aGGgGGGGGGGAgaGGGGGCGGGGAGcGGg -3'
miRNA:   3'- -CUgCUCCUCCUg-CUCCUGCUCCUC-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.