miRNA display CGI


Results 81 - 100 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29516 5' -58.1 NC_006151.1 + 33330 0.75 0.335639
Target:  5'- gGAC-AGG-GGGCGGGGGCGGGGAGaGGa -3'
miRNA:   3'- -CUGcUCCuCCUGCUCCUGCUCCUC-CU- -5'
29516 5' -58.1 NC_006151.1 + 33356 0.71 0.535191
Target:  5'- --aGAGGAGGA-GAGGA-GAcGGAGGAg -3'
miRNA:   3'- cugCUCCUCCUgCUCCUgCU-CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 33399 0.66 0.824047
Target:  5'- gGACaGAGGcGGA-GAGGGCGAGcGAGa- -3'
miRNA:   3'- -CUG-CUCCuCCUgCUCCUGCUC-CUCcu -5'
29516 5' -58.1 NC_006151.1 + 33472 0.72 0.478158
Target:  5'- aGGCGAGaGAGGAgGAGaAgGAGGAGGc -3'
miRNA:   3'- -CUGCUC-CUCCUgCUCcUgCUCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 34396 0.73 0.424282
Target:  5'- --aGAGG-GGugGGGGA-GAGGAGGGg -3'
miRNA:   3'- cugCUCCuCCugCUCCUgCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 34652 0.69 0.684553
Target:  5'- cGCG-GGAGGGucuCGGGGGucucaggggucuCGAGGAGGGg -3'
miRNA:   3'- cUGCuCCUCCU---GCUCCU------------GCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 36202 0.7 0.584453
Target:  5'- gGGCGAGaucguggugcuaGAcGACGAaGACGAGGAGGAg -3'
miRNA:   3'- -CUGCUC------------CUcCUGCUcCUGCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 36847 0.69 0.674599
Target:  5'- gGACGAGGAcGGAcucggccucgcCGGGGACGGcGGGGc -3'
miRNA:   3'- -CUGCUCCU-CCU-----------GCUCCUGCUcCUCCu -5'
29516 5' -58.1 NC_006151.1 + 37426 0.66 0.807031
Target:  5'- cGCGAGGggcucuGGGACGAGGACGAc----- -3'
miRNA:   3'- cUGCUCC------UCCUGCUCCUGCUccuccu -5'
29516 5' -58.1 NC_006151.1 + 38606 0.75 0.366254
Target:  5'- cGGCGAGGAGGACGAGGggcucuccgGCGcGGcccuccgcgGGGAc -3'
miRNA:   3'- -CUGCUCCUCCUGCUCC---------UGCuCC---------UCCU- -5'
29516 5' -58.1 NC_006151.1 + 40086 0.68 0.743102
Target:  5'- gGGCGccGGGGccggccccgGCGAGGACGGGGAcucuguGGAg -3'
miRNA:   3'- -CUGCucCUCC---------UGCUCCUGCUCCU------CCU- -5'
29516 5' -58.1 NC_006151.1 + 40203 0.72 0.487466
Target:  5'- cGACGAGGAGGcCGAGGACGccGGc-- -3'
miRNA:   3'- -CUGCUCCUCCuGCUCCUGCucCUccu -5'
29516 5' -58.1 NC_006151.1 + 40580 0.67 0.789405
Target:  5'- cGCGGcGGAGGGCucGG-CGGcGGAGGAu -3'
miRNA:   3'- cUGCU-CCUCCUGcuCCuGCU-CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 41185 0.68 0.733527
Target:  5'- gGugGucGAGG--GGGGugGGGGGGGAa -3'
miRNA:   3'- -CugCucCUCCugCUCCugCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 41309 0.67 0.752584
Target:  5'- aGGgGGGGGGGGgGGGGugGuGGuGGu -3'
miRNA:   3'- -CUgCUCCUCCUgCUCCugCuCCuCCu -5'
29516 5' -58.1 NC_006151.1 + 41859 0.67 0.792976
Target:  5'- aAUGGGGGGGGgGGGGAgGAGcccggcgucacguccGGGGAa -3'
miRNA:   3'- cUGCUCCUCCUgCUCCUgCUC---------------CUCCU- -5'
29516 5' -58.1 NC_006151.1 + 42088 0.67 0.761031
Target:  5'- aAUGAGGGGGugGGGuuaugcaGAUcagGGGGAGGGg -3'
miRNA:   3'- cUGCUCCUCCugCUC-------CUG---CUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 42774 0.66 0.807031
Target:  5'- -cCGGGGgguGGGACGugacuGGGCGGGGuggcGGGAc -3'
miRNA:   3'- cuGCUCC---UCCUGCu----CCUGCUCC----UCCU- -5'
29516 5' -58.1 NC_006151.1 + 42875 0.74 0.374202
Target:  5'- -uCGAGGGGGccGCGAGGGaGAGGGGGu -3'
miRNA:   3'- cuGCUCCUCC--UGCUCCUgCUCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 43344 0.67 0.789405
Target:  5'- --aGAGGAGaagcGgGAGGGgGGGGGGGAg -3'
miRNA:   3'- cugCUCCUCc---UgCUCCUgCUCCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.