miRNA display CGI


Results 101 - 120 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29516 5' -58.1 NC_006151.1 + 43704 0.71 0.554748
Target:  5'- cGACGGGGAGaGGaaccgaaaaauCGGGGACGGuGGGGGc -3'
miRNA:   3'- -CUGCUCCUC-CU-----------GCUCCUGCU-CCUCCu -5'
29516 5' -58.1 NC_006151.1 + 43914 0.67 0.771233
Target:  5'- --aGGGGAGG--GGGGAagagaGAGGAGGGa -3'
miRNA:   3'- cugCUCCUCCugCUCCUg----CUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 44294 0.7 0.634531
Target:  5'- aACaGGGGGGaACGGGGAUgcgaaGGGGAGGGg -3'
miRNA:   3'- cUGcUCCUCC-UGCUCCUG-----CUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 44339 0.72 0.506331
Target:  5'- aGAgGAGGGccgcGGACGgguGGGACGGcGGGGGAg -3'
miRNA:   3'- -CUgCUCCU----CCUGC---UCCUGCU-CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 44465 0.77 0.273749
Target:  5'- cGAUGGGGGGuGAgGGuGGACGGGGGGGGu -3'
miRNA:   3'- -CUGCUCCUC-CUgCU-CCUGCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 44825 0.71 0.543963
Target:  5'- uGCGAGGgcgucgggaccGGGGCGAGcggggucGugGAGGGGGGg -3'
miRNA:   3'- cUGCUCC-----------UCCUGCUC-------CugCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 45311 0.68 0.701375
Target:  5'- cGCGAGGccgggaggcugggaGGGugGcGGugGAGGAcGGGa -3'
miRNA:   3'- cUGCUCC--------------UCCugCuCCugCUCCU-CCU- -5'
29516 5' -58.1 NC_006151.1 + 45613 0.67 0.79829
Target:  5'- cGACGGGGcGGGCGgaagGGGGCGuGGAcgccccGGGc -3'
miRNA:   3'- -CUGCUCCuCCUGC----UCCUGCuCCU------CCU- -5'
29516 5' -58.1 NC_006151.1 + 46038 0.68 0.704327
Target:  5'- cGACGGGGAagaGGAUGAGccgguaGGGGGGGGc -3'
miRNA:   3'- -CUGCUCCU---CCUGCUCcug---CUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 46100 0.67 0.761964
Target:  5'- -cCGAGGAGGuGCGcc-ACGAGGAGGc -3'
miRNA:   3'- cuGCUCCUCC-UGCuccUGCUCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 49519 0.78 0.232201
Target:  5'- -cCGGcGGAGGACGAGGAgGgGGGAGGGg -3'
miRNA:   3'- cuGCU-CCUCCUGCUCCUgC-UCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 49631 0.68 0.723867
Target:  5'- cGCGAGuGGGGGUGGGccGugGAGGAGGu -3'
miRNA:   3'- cUGCUC-CUCCUGCUC--CugCUCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 49750 0.79 0.210928
Target:  5'- --aGAGGGGGACGuGGaagacgGCGAGGAGGGg -3'
miRNA:   3'- cugCUCCUCCUGCuCC------UGCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 49816 0.75 0.358423
Target:  5'- aGACGGGGGGGACGAagGGACGAcGAcGGc -3'
miRNA:   3'- -CUGCUCCUCCUGCU--CCUGCUcCU-CCu -5'
29516 5' -58.1 NC_006151.1 + 66825 0.85 0.080535
Target:  5'- cGACGAGGAGGAUGGGGGgGAaGAGGAg -3'
miRNA:   3'- -CUGCUCCUCCUGCUCCUgCUcCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 66896 0.7 0.584453
Target:  5'- cGCGccGGAGGACGccGcCGAGGAGGGc -3'
miRNA:   3'- cUGCu-CCUCCUGCucCuGCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 66924 0.72 0.487466
Target:  5'- cACGAuGGAGG-CGGGGGCGAGGgcaaAGGc -3'
miRNA:   3'- cUGCU-CCUCCuGCUCCUGCUCC----UCCu -5'
29516 5' -58.1 NC_006151.1 + 67442 0.71 0.554748
Target:  5'- -uCGGGGAuGGCGcGGGCGGGGGGGu -3'
miRNA:   3'- cuGCUCCUcCUGCuCCUGCUCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 71551 0.82 0.138386
Target:  5'- uGCGAgGGAGGG-GGGGGCGAGGGGGAc -3'
miRNA:   3'- cUGCU-CCUCCUgCUCCUGCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 72564 0.67 0.756349
Target:  5'- cGCGcGGGAGGGUGGGGGCGGGugacagagucgggguGAGGGg -3'
miRNA:   3'- cUGC-UCCUCCUGCUCCUGCUC---------------CUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.