miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29516 5' -58.1 NC_006151.1 + 142527 0.73 0.459811
Target:  5'- aACGAGGGGGuuGGGGgaaaggggggaACGAGGGGGu -3'
miRNA:   3'- cUGCUCCUCCugCUCC-----------UGCUCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 142475 0.73 0.459811
Target:  5'- aACGAGGGGGuuGGGGgaaaggggggaACGAGGGGGu -3'
miRNA:   3'- cUGCUCCUCCugCUCC-----------UGCUCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 142423 0.73 0.459811
Target:  5'- aACGAGGGGGuuGGGGgaaaggggggaACGAGGGGGu -3'
miRNA:   3'- cUGCUCCUCCugCUCC-----------UGCUCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 142371 0.73 0.459811
Target:  5'- aACGAGGGGGuuGGGGgaaaggggggaACGAGGGGGu -3'
miRNA:   3'- cUGCUCCUCCugCUCC-----------UGCUCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 141370 0.66 0.824047
Target:  5'- -cCGAGuAGGACGGGGGCGGGccccGGGc -3'
miRNA:   3'- cuGCUCcUCCUGCUCCUGCUCcu--CCU- -5'
29516 5' -58.1 NC_006151.1 + 139535 0.7 0.594429
Target:  5'- aGCGAGGcguccAGGuCGGGGAgCGAGGAGcGGc -3'
miRNA:   3'- cUGCUCC-----UCCuGCUCCU-GCUCCUC-CU- -5'
29516 5' -58.1 NC_006151.1 + 138619 0.68 0.743102
Target:  5'- cGGCGAGGAcgccgccggGGGCGcgccGGACuGGGAGGc -3'
miRNA:   3'- -CUGCUCCU---------CCUGCu---CCUGcUCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 137589 0.7 0.614454
Target:  5'- cGACGAGGucggggucGGGAuCGGGGGCGcGGGcgGGGAc -3'
miRNA:   3'- -CUGCUCC--------UCCU-GCUCCUGC-UCC--UCCU- -5'
29516 5' -58.1 NC_006151.1 + 135514 0.69 0.653598
Target:  5'- -cCGAGGccaucacguccucGGcGGCGAgcgGGGCGGGGAGGAu -3'
miRNA:   3'- cuGCUCC-------------UC-CUGCU---CCUGCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 135123 0.69 0.684553
Target:  5'- cGCGGGGcGGGCu-GGGCGGGGAcGGGc -3'
miRNA:   3'- cUGCUCCuCCUGcuCCUGCUCCU-CCU- -5'
29516 5' -58.1 NC_006151.1 + 131710 0.69 0.64457
Target:  5'- cGCGucgcGGGGGAUGAGGugGuAGGcGGGGu -3'
miRNA:   3'- cUGCu---CCUCCUGCUCCugC-UCC-UCCU- -5'
29516 5' -58.1 NC_006151.1 + 130926 0.71 0.544941
Target:  5'- -cCGGGcccgcGGGGGCGGGGGCGGcGGGGGGu -3'
miRNA:   3'- cuGCUC-----CUCCUGCUCCUGCU-CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 121652 0.67 0.771233
Target:  5'- cGCGGcGGAcGGGCGGGcGGaGGGGGGGAg -3'
miRNA:   3'- cUGCU-CCU-CCUGCUC-CUgCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 121556 0.69 0.64457
Target:  5'- gGAgGAGGAGGGgaaGGGGACGGGcGcGGGu -3'
miRNA:   3'- -CUgCUCCUCCUg--CUCCUGCUC-CuCCU- -5'
29516 5' -58.1 NC_006151.1 + 121363 0.7 0.634531
Target:  5'- aGACGGGcGcGGACGGcGGCGAGGAGa- -3'
miRNA:   3'- -CUGCUC-CuCCUGCUcCUGCUCCUCcu -5'
29516 5' -58.1 NC_006151.1 + 119175 0.7 0.628506
Target:  5'- uGACgGAGGuGGACGAcgcGGGCGccgccgacgcgcgcaAGGAGGGc -3'
miRNA:   3'- -CUG-CUCCuCCUGCU---CCUGC---------------UCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 118420 0.69 0.64457
Target:  5'- -cCGAGGA-GACGAcGGGCGcGGAGGu -3'
miRNA:   3'- cuGCUCCUcCUGCU-CCUGCuCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 112570 0.69 0.6546
Target:  5'- gGACGAGGAGGACucgcccgcGGGcuuCGuGGAGGc -3'
miRNA:   3'- -CUGCUCCUCCUGc-------UCCu--GCuCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 111668 0.66 0.848293
Target:  5'- cGGCcAGGGGGGCGucGGCGGGccGGAa -3'
miRNA:   3'- -CUGcUCCUCCUGCucCUGCUCcuCCU- -5'
29516 5' -58.1 NC_006151.1 + 110792 0.69 0.64457
Target:  5'- cGCGGGGcuAGGGCgGGGGGCGAGGGc-- -3'
miRNA:   3'- cUGCUCC--UCCUG-CUCCUGCUCCUccu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.