miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29516 5' -58.1 NC_006151.1 + 110640 0.66 0.824047
Target:  5'- gGACuuGGGGGGACuuggGGGGACuuGGGGGGAu -3'
miRNA:   3'- -CUGc-UCCUCCUG----CUCCUGc-UCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 110600 0.66 0.832306
Target:  5'- nGACuuGGGGGGACuuggGGGGACuuGGGGGGa -3'
miRNA:   3'- -CUGc-UCCUCCUG----CUCCUGcuCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 110570 0.66 0.832306
Target:  5'- gGACuuGGGGGGACuuggGGGGACuuGGGGGGa -3'
miRNA:   3'- -CUGc-UCCUCCUG----CUCCUGcuCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 110533 0.67 0.771233
Target:  5'- gGACuuGGGGGACuuggGGGGACuuGGGGGGAu -3'
miRNA:   3'- -CUGcuCCUCCUG----CUCCUGc-UCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 110480 0.7 0.62449
Target:  5'- -uUGGGGGGGAUugGGGGACuuGGGGGGAu -3'
miRNA:   3'- cuGCUCCUCCUG--CUCCUGc-UCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 110365 0.7 0.584453
Target:  5'- aGACuuGGAGGugGGGaGAUcGGGGGGAa -3'
miRNA:   3'- -CUGcuCCUCCugCUC-CUGcUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 110043 0.9 0.039385
Target:  5'- cGAgGAGGGGGACGAGGACGGGGAcgaGGAc -3'
miRNA:   3'- -CUgCUCCUCCUGCUCCUGCUCCU---CCU- -5'
29516 5' -58.1 NC_006151.1 + 105250 0.72 0.515881
Target:  5'- -cCGAGGucgccuGGGACGAGGcCuGGGAGGAc -3'
miRNA:   3'- cuGCUCC------UCCUGCUCCuGcUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 103002 0.67 0.780383
Target:  5'- aGGCGGGcGAGGACGugagcacGGACGAGcGccucGGGGc -3'
miRNA:   3'- -CUGCUC-CUCCUGCu------CCUGCUC-C----UCCU- -5'
29516 5' -58.1 NC_006151.1 + 101212 0.67 0.780383
Target:  5'- cGCGAGGGccaGGCGuGGACGGGGcccggcGGGGg -3'
miRNA:   3'- cUGCUCCUc--CUGCuCCUGCUCC------UCCU- -5'
29516 5' -58.1 NC_006151.1 + 100800 0.7 0.614454
Target:  5'- cACGAGGuggcGGGCGAcGGCGAGGcGGGc -3'
miRNA:   3'- cUGCUCCu---CCUGCUcCUGCUCCuCCU- -5'
29516 5' -58.1 NC_006151.1 + 100454 0.66 0.807031
Target:  5'- aGACGAcGGAGGcgcugcGCGAGuGCGAGGcgcuGGGc -3'
miRNA:   3'- -CUGCU-CCUCC------UGCUCcUGCUCCu---CCU- -5'
29516 5' -58.1 NC_006151.1 + 96885 0.67 0.797408
Target:  5'- cGCGGGGgcaugauGGGAUGugucuGGGCGGGGcGGGAc -3'
miRNA:   3'- cUGCUCC-------UCCUGCu----CCUGCUCC-UCCU- -5'
29516 5' -58.1 NC_006151.1 + 96726 0.76 0.306936
Target:  5'- gGACGAGGAGGcgGCGGGcgcGACGAcGGAGGc -3'
miRNA:   3'- -CUGCUCCUCC--UGCUC---CUGCU-CCUCCu -5'
29516 5' -58.1 NC_006151.1 + 93430 0.81 0.15695
Target:  5'- --aGAGGAGGAgGGGGGCGAGcGGGGGu -3'
miRNA:   3'- cugCUCCUCCUgCUCCUGCUC-CUCCU- -5'
29516 5' -58.1 NC_006151.1 + 89606 0.69 0.684553
Target:  5'- -gUGAGGAcgauGGccGCGAGGAUGAGGAGc- -3'
miRNA:   3'- cuGCUCCU----CC--UGCUCCUGCUCCUCcu -5'
29516 5' -58.1 NC_006151.1 + 89168 0.73 0.450779
Target:  5'- gGGCGAGGcGGGcGCGGGGGuCGGGGGcGGAg -3'
miRNA:   3'- -CUGCUCC-UCC-UGCUCCU-GCUCCU-CCU- -5'
29516 5' -58.1 NC_006151.1 + 84389 0.71 0.554748
Target:  5'- cGCGGGGAcGGGCGGGGAgCG-GGuGGGc -3'
miRNA:   3'- cUGCUCCU-CCUGCUCCU-GCuCCuCCU- -5'
29516 5' -58.1 NC_006151.1 + 82686 0.72 0.515881
Target:  5'- gGGCGAGGGcGGcggcccccGCGAGGGCcAGGAGGc -3'
miRNA:   3'- -CUGCUCCU-CC--------UGCUCCUGcUCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 80333 0.67 0.771233
Target:  5'- ---uGGGGGGACcGGGGCGAGGGcGGc -3'
miRNA:   3'- cugcUCCUCCUGcUCCUGCUCCU-CCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.