miRNA display CGI


Results 81 - 100 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29516 5' -58.1 NC_006151.1 + 33330 0.75 0.335639
Target:  5'- gGAC-AGG-GGGCGGGGGCGGGGAGaGGa -3'
miRNA:   3'- -CUGcUCCuCCUGCUCCUGCUCCUC-CU- -5'
29516 5' -58.1 NC_006151.1 + 33155 0.86 0.076425
Target:  5'- uGCGAGGcGGGuCGGGGGCGGGGAGGAa -3'
miRNA:   3'- cUGCUCC-UCCuGCUCCUGCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 33076 0.79 0.210928
Target:  5'- aGACGGaGGGGGCGAGGGCGGgcgguGGAGGGg -3'
miRNA:   3'- -CUGCUcCUCCUGCUCCUGCU-----CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 33033 0.75 0.350709
Target:  5'- -cCGAGGAcGACGGGGA-GGGGGGGAu -3'
miRNA:   3'- cuGCUCCUcCUGCUCCUgCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 32843 0.71 0.564606
Target:  5'- --aGAGGGGGgccgGCGGGGAUGGGGAaGAa -3'
miRNA:   3'- cugCUCCUCC----UGCUCCUGCUCCUcCU- -5'
29516 5' -58.1 NC_006151.1 + 32121 0.73 0.433012
Target:  5'- --aGAGGGGGACGGGGGgagagaGAGcGAGGGg -3'
miRNA:   3'- cugCUCCUCCUGCUCCUg-----CUC-CUCCU- -5'
29516 5' -58.1 NC_006151.1 + 31963 0.67 0.79829
Target:  5'- -cCGGGGAcgcgGGACGugcccgccgccuGGGagccgGCGAGGAGGAc -3'
miRNA:   3'- cuGCUCCU----CCUGC------------UCC-----UGCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 31657 0.75 0.328283
Target:  5'- cGCGGGGAGGGagGAGGGCGgAGGaAGGGc -3'
miRNA:   3'- cUGCUCCUCCUg-CUCCUGC-UCC-UCCU- -5'
29516 5' -58.1 NC_006151.1 + 31410 0.73 0.441845
Target:  5'- gGGCGAGG-GGAaGGGGAagGGGGGGGAc -3'
miRNA:   3'- -CUGCUCCuCCUgCUCCUg-CUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 30974 0.92 0.027047
Target:  5'- gGGCGGGGgacgGGGACGGGGACGGGGAGGAg -3'
miRNA:   3'- -CUGCUCC----UCCUGCUCCUGCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 30852 0.76 0.293304
Target:  5'- aGCGAGGAGGACuGGcGGCGGcggcGGAGGAg -3'
miRNA:   3'- cUGCUCCUCCUGcUC-CUGCU----CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 30803 0.68 0.714131
Target:  5'- cGAUGGccccGGGGGcACGcGGGCG-GGAGGAg -3'
miRNA:   3'- -CUGCU----CCUCC-UGCuCCUGCuCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 30636 0.66 0.807031
Target:  5'- uGCGGGuGGGugGGGGAgGGGGuuGAu -3'
miRNA:   3'- cUGCUCcUCCugCUCCUgCUCCucCU- -5'
29516 5' -58.1 NC_006151.1 + 30409 0.72 0.468939
Target:  5'- cGACGGGGAgaGGAaggaGGGGAgGAcGGAGGGc -3'
miRNA:   3'- -CUGCUCCU--CCUg---CUCCUgCU-CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 30330 0.67 0.789405
Target:  5'- aGAUGAGGAGGcgGCGGcGGcGCGAGGGcGcGAa -3'
miRNA:   3'- -CUGCUCCUCC--UGCU-CC-UGCUCCU-C-CU- -5'
29516 5' -58.1 NC_006151.1 + 30166 0.7 0.584453
Target:  5'- aGCGcGGGAGGGCgggugagaGAGGuCGGGGAGGc -3'
miRNA:   3'- cUGC-UCCUCCUG--------CUCCuGCUCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 30021 0.76 0.286667
Target:  5'- aGGCaggaGGGGGGAgGAGGGgGGGGAGGAg -3'
miRNA:   3'- -CUGc---UCCUCCUgCUCCUgCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 29789 0.68 0.743102
Target:  5'- --aGAGaGAGGA-GAGGGaGGGGAGGGg -3'
miRNA:   3'- cugCUC-CUCCUgCUCCUgCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 29673 0.76 0.30006
Target:  5'- gGGgGGGGGGGGCGGGGugGGGGAu-- -3'
miRNA:   3'- -CUgCUCCUCCUGCUCCugCUCCUccu -5'
29516 5' -58.1 NC_006151.1 + 29632 0.73 0.450779
Target:  5'- aGugGGGGAauugggGGugGGGGAaauggGGGGAGGAg -3'
miRNA:   3'- -CugCUCCU------CCugCUCCUg----CUCCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.