miRNA display CGI


Results 41 - 60 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29516 5' -58.1 NC_006151.1 + 12355 0.66 0.832306
Target:  5'- gGGCGGGGAGcGCGAGcgggagaagguuGGCGAaGGAGaGAg -3'
miRNA:   3'- -CUGCUCCUCcUGCUC------------CUGCU-CCUC-CU- -5'
29516 5' -58.1 NC_006151.1 + 110570 0.66 0.832306
Target:  5'- gGACuuGGGGGGACuuggGGGGACuuGGGGGGa -3'
miRNA:   3'- -CUGc-UCCUCCUG----CUCCUGcuCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 110600 0.66 0.832306
Target:  5'- nGACuuGGGGGGACuuggGGGGACuuGGGGGGa -3'
miRNA:   3'- -CUGc-UCCUCCUG----CUCCUGcuCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 15376 0.66 0.832306
Target:  5'- uGGgGAGGAGugcGACGucGACGAGGAcGAc -3'
miRNA:   3'- -CUgCUCCUC---CUGCucCUGCUCCUcCU- -5'
29516 5' -58.1 NC_006151.1 + 16749 0.66 0.840391
Target:  5'- --aGGGGGGaGAUGGGGGagggaGAGaGAGGAc -3'
miRNA:   3'- cugCUCCUC-CUGCUCCUg----CUC-CUCCU- -5'
29516 5' -58.1 NC_006151.1 + 100454 0.66 0.807031
Target:  5'- aGACGAcGGAGGcgcugcGCGAGuGCGAGGcgcuGGGc -3'
miRNA:   3'- -CUGCU-CCUCC------UGCUCcUGCUCCu---CCU- -5'
29516 5' -58.1 NC_006151.1 + 30636 0.66 0.807031
Target:  5'- uGCGGGuGGGugGGGGAgGGGGuuGAu -3'
miRNA:   3'- cUGCUCcUCCugCUCCUgCUCCucCU- -5'
29516 5' -58.1 NC_006151.1 + 121652 0.67 0.771233
Target:  5'- cGCGGcGGAcGGGCGGGcGGaGGGGGGGAg -3'
miRNA:   3'- cUGCU-CCU-CCUGCUC-CUgCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 27558 0.67 0.780383
Target:  5'- gGGCuGGGcuGGGACGGGGGCcGGGuGGGu -3'
miRNA:   3'- -CUGcUCC--UCCUGCUCCUGcUCCuCCU- -5'
29516 5' -58.1 NC_006151.1 + 101212 0.67 0.780383
Target:  5'- cGCGAGGGccaGGCGuGGACGGGGcccggcGGGGg -3'
miRNA:   3'- cUGCUCCUc--CUGCuCCUGCUCC------UCCU- -5'
29516 5' -58.1 NC_006151.1 + 103002 0.67 0.780383
Target:  5'- aGGCGGGcGAGGACGugagcacGGACGAGcGccucGGGGc -3'
miRNA:   3'- -CUGCUC-CUCCUGCu------CCUGCUC-C----UCCU- -5'
29516 5' -58.1 NC_006151.1 + 16829 0.67 0.789405
Target:  5'- -uUGGGGGGuGugGGGGAUGcGGAGaGAu -3'
miRNA:   3'- cuGCUCCUC-CugCUCCUGCuCCUC-CU- -5'
29516 5' -58.1 NC_006151.1 + 27817 0.67 0.789405
Target:  5'- --gGGGGAGGG-GAGG--GGGGAGGAg -3'
miRNA:   3'- cugCUCCUCCUgCUCCugCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 43344 0.67 0.789405
Target:  5'- --aGAGGAGaagcGgGAGGGgGGGGGGGAg -3'
miRNA:   3'- cugCUCCUCc---UgCUCCUgCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 30330 0.67 0.789405
Target:  5'- aGAUGAGGAGGcgGCGGcGGcGCGAGGGcGcGAa -3'
miRNA:   3'- -CUGCUCCUCC--UGCU-CC-UGCUCCU-C-CU- -5'
29516 5' -58.1 NC_006151.1 + 40580 0.67 0.789405
Target:  5'- cGCGGcGGAGGGCucGG-CGGcGGAGGAu -3'
miRNA:   3'- cUGCU-CCUCCUGcuCCuGCU-CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 41859 0.67 0.792976
Target:  5'- aAUGGGGGGGGgGGGGAgGAGcccggcgucacguccGGGGAa -3'
miRNA:   3'- cUGCUCCUCCUgCUCCUgCUC---------------CUCCU- -5'
29516 5' -58.1 NC_006151.1 + 96885 0.67 0.797408
Target:  5'- cGCGGGGgcaugauGGGAUGugucuGGGCGGGGcGGGAc -3'
miRNA:   3'- cUGCUCC-------UCCUGCu----CCUGCUCC-UCCU- -5'
29516 5' -58.1 NC_006151.1 + 45613 0.67 0.79829
Target:  5'- cGACGGGGcGGGCGgaagGGGGCGuGGAcgccccGGGc -3'
miRNA:   3'- -CUGCUCCuCCUGC----UCCUGCuCCU------CCU- -5'
29516 5' -58.1 NC_006151.1 + 31963 0.67 0.79829
Target:  5'- -cCGGGGAcgcgGGACGugcccgccgccuGGGagccgGCGAGGAGGAc -3'
miRNA:   3'- cuGCUCCU----CCUGC------------UCC-----UGCUCCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.