Results 81 - 100 of 161 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29516 | 5' | -58.1 | NC_006151.1 | + | 30803 | 0.68 | 0.714131 |
Target: 5'- cGAUGGccccGGGGGcACGcGGGCG-GGAGGAg -3' miRNA: 3'- -CUGCU----CCUCC-UGCuCCUGCuCCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 46038 | 0.68 | 0.704327 |
Target: 5'- cGACGGGGAagaGGAUGAGccgguaGGGGGGGGc -3' miRNA: 3'- -CUGCUCCU---CCUGCUCcug---CUCCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 45311 | 0.68 | 0.701375 |
Target: 5'- cGCGAGGccgggaggcugggaGGGugGcGGugGAGGAcGGGa -3' miRNA: 3'- cUGCUCC--------------UCCugCuCCugCUCCU-CCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 89606 | 0.69 | 0.684553 |
Target: 5'- -gUGAGGAcgauGGccGCGAGGAUGAGGAGc- -3' miRNA: 3'- cuGCUCCU----CC--UGCUCCUGCUCCUCcu -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 34652 | 0.69 | 0.684553 |
Target: 5'- cGCG-GGAGGGucuCGGGGGucucaggggucuCGAGGAGGGg -3' miRNA: 3'- cUGCuCCUCCU---GCUCCU------------GCUCCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 135123 | 0.69 | 0.684553 |
Target: 5'- cGCGGGGcGGGCu-GGGCGGGGAcGGGc -3' miRNA: 3'- cUGCUCCuCCUGcuCCUGCUCCU-CCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 36847 | 0.69 | 0.674599 |
Target: 5'- gGACGAGGAcGGAcucggccucgcCGGGGACGGcGGGGc -3' miRNA: 3'- -CUGCUCCU-CCU-----------GCUCCUGCUcCUCCu -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 16590 | 0.68 | 0.743102 |
Target: 5'- gGugGGGGGGGAgucCGGGGGaguccGGGGGAg -3' miRNA: 3'- -CugCUCCUCCU---GCUCCUgcu--CCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 40086 | 0.68 | 0.743102 |
Target: 5'- gGGCGccGGGGccggccccgGCGAGGACGGGGAcucuguGGAg -3' miRNA: 3'- -CUGCucCUCC---------UGCUCCUGCUCCU------CCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 138619 | 0.68 | 0.743102 |
Target: 5'- cGGCGAGGAcgccgccggGGGCGcgccGGACuGGGAGGc -3' miRNA: 3'- -CUGCUCCU---------CCUGCu---CCUGcUCCUCCu -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 101212 | 0.67 | 0.780383 |
Target: 5'- cGCGAGGGccaGGCGuGGACGGGGcccggcGGGGg -3' miRNA: 3'- cUGCUCCUc--CUGCuCCUGCUCC------UCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 27558 | 0.67 | 0.780383 |
Target: 5'- gGGCuGGGcuGGGACGGGGGCcGGGuGGGu -3' miRNA: 3'- -CUGcUCC--UCCUGCUCCUGcUCCuCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 121652 | 0.67 | 0.771233 |
Target: 5'- cGCGGcGGAcGGGCGGGcGGaGGGGGGGAg -3' miRNA: 3'- cUGCU-CCU-CCUGCUC-CUgCUCCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 110533 | 0.67 | 0.771233 |
Target: 5'- gGACuuGGGGGACuuggGGGGACuuGGGGGGAu -3' miRNA: 3'- -CUGcuCCUCCUG----CUCCUGc-UCCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 80333 | 0.67 | 0.771233 |
Target: 5'- ---uGGGGGGACcGGGGCGAGGGcGGc -3' miRNA: 3'- cugcUCCUCCUGcUCCUGCUCCU-CCu -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 43914 | 0.67 | 0.771233 |
Target: 5'- --aGGGGAGG--GGGGAagagaGAGGAGGGa -3' miRNA: 3'- cugCUCCUCCugCUCCUg----CUCCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 46100 | 0.67 | 0.761964 |
Target: 5'- -cCGAGGAGGuGCGcc-ACGAGGAGGc -3' miRNA: 3'- cuGCUCCUCC-UGCuccUGCUCCUCCu -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 42088 | 0.67 | 0.761031 |
Target: 5'- aAUGAGGGGGugGGGuuaugcaGAUcagGGGGAGGGg -3' miRNA: 3'- cUGCUCCUCCugCUC-------CUG---CUCCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 72564 | 0.67 | 0.756349 |
Target: 5'- cGCGcGGGAGGGUGGGGGCGGGugacagagucgggguGAGGGg -3' miRNA: 3'- cUGC-UCCUCCUGCUCCUGCUC---------------CUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 41309 | 0.67 | 0.752584 |
Target: 5'- aGGgGGGGGGGGgGGGGugGuGGuGGu -3' miRNA: 3'- -CUgCUCCUCCUgCUCCugCuCCuCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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