Results 41 - 60 of 161 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29516 | 5' | -58.1 | NC_006151.1 | + | 12355 | 0.66 | 0.832306 |
Target: 5'- gGGCGGGGAGcGCGAGcgggagaagguuGGCGAaGGAGaGAg -3' miRNA: 3'- -CUGCUCCUCcUGCUC------------CUGCU-CCUC-CU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 110570 | 0.66 | 0.832306 |
Target: 5'- gGACuuGGGGGGACuuggGGGGACuuGGGGGGa -3' miRNA: 3'- -CUGc-UCCUCCUG----CUCCUGcuCCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 110600 | 0.66 | 0.832306 |
Target: 5'- nGACuuGGGGGGACuuggGGGGACuuGGGGGGa -3' miRNA: 3'- -CUGc-UCCUCCUG----CUCCUGcuCCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 15376 | 0.66 | 0.832306 |
Target: 5'- uGGgGAGGAGugcGACGucGACGAGGAcGAc -3' miRNA: 3'- -CUgCUCCUC---CUGCucCUGCUCCUcCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 16749 | 0.66 | 0.840391 |
Target: 5'- --aGGGGGGaGAUGGGGGagggaGAGaGAGGAc -3' miRNA: 3'- cugCUCCUC-CUGCUCCUg----CUC-CUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 100454 | 0.66 | 0.807031 |
Target: 5'- aGACGAcGGAGGcgcugcGCGAGuGCGAGGcgcuGGGc -3' miRNA: 3'- -CUGCU-CCUCC------UGCUCcUGCUCCu---CCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 30636 | 0.66 | 0.807031 |
Target: 5'- uGCGGGuGGGugGGGGAgGGGGuuGAu -3' miRNA: 3'- cUGCUCcUCCugCUCCUgCUCCucCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 121652 | 0.67 | 0.771233 |
Target: 5'- cGCGGcGGAcGGGCGGGcGGaGGGGGGGAg -3' miRNA: 3'- cUGCU-CCU-CCUGCUC-CUgCUCCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 27558 | 0.67 | 0.780383 |
Target: 5'- gGGCuGGGcuGGGACGGGGGCcGGGuGGGu -3' miRNA: 3'- -CUGcUCC--UCCUGCUCCUGcUCCuCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 101212 | 0.67 | 0.780383 |
Target: 5'- cGCGAGGGccaGGCGuGGACGGGGcccggcGGGGg -3' miRNA: 3'- cUGCUCCUc--CUGCuCCUGCUCC------UCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 103002 | 0.67 | 0.780383 |
Target: 5'- aGGCGGGcGAGGACGugagcacGGACGAGcGccucGGGGc -3' miRNA: 3'- -CUGCUC-CUCCUGCu------CCUGCUC-C----UCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 16829 | 0.67 | 0.789405 |
Target: 5'- -uUGGGGGGuGugGGGGAUGcGGAGaGAu -3' miRNA: 3'- cuGCUCCUC-CugCUCCUGCuCCUC-CU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 27817 | 0.67 | 0.789405 |
Target: 5'- --gGGGGAGGG-GAGG--GGGGAGGAg -3' miRNA: 3'- cugCUCCUCCUgCUCCugCUCCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 43344 | 0.67 | 0.789405 |
Target: 5'- --aGAGGAGaagcGgGAGGGgGGGGGGGAg -3' miRNA: 3'- cugCUCCUCc---UgCUCCUgCUCCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 30330 | 0.67 | 0.789405 |
Target: 5'- aGAUGAGGAGGcgGCGGcGGcGCGAGGGcGcGAa -3' miRNA: 3'- -CUGCUCCUCC--UGCU-CC-UGCUCCU-C-CU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 40580 | 0.67 | 0.789405 |
Target: 5'- cGCGGcGGAGGGCucGG-CGGcGGAGGAu -3' miRNA: 3'- cUGCU-CCUCCUGcuCCuGCU-CCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 41859 | 0.67 | 0.792976 |
Target: 5'- aAUGGGGGGGGgGGGGAgGAGcccggcgucacguccGGGGAa -3' miRNA: 3'- cUGCUCCUCCUgCUCCUgCUC---------------CUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 96885 | 0.67 | 0.797408 |
Target: 5'- cGCGGGGgcaugauGGGAUGugucuGGGCGGGGcGGGAc -3' miRNA: 3'- cUGCUCC-------UCCUGCu----CCUGCUCC-UCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 45613 | 0.67 | 0.79829 |
Target: 5'- cGACGGGGcGGGCGgaagGGGGCGuGGAcgccccGGGc -3' miRNA: 3'- -CUGCUCCuCCUGC----UCCUGCuCCU------CCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 31963 | 0.67 | 0.79829 |
Target: 5'- -cCGGGGAcgcgGGACGugcccgccgccuGGGagccgGCGAGGAGGAc -3' miRNA: 3'- cuGCUCCU----CCUGC------------UCC-----UGCUCCUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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