miRNA display CGI


Results 81 - 100 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29516 5' -58.1 NC_006151.1 + 30803 0.68 0.714131
Target:  5'- cGAUGGccccGGGGGcACGcGGGCG-GGAGGAg -3'
miRNA:   3'- -CUGCU----CCUCC-UGCuCCUGCuCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 46038 0.68 0.704327
Target:  5'- cGACGGGGAagaGGAUGAGccgguaGGGGGGGGc -3'
miRNA:   3'- -CUGCUCCU---CCUGCUCcug---CUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 45311 0.68 0.701375
Target:  5'- cGCGAGGccgggaggcugggaGGGugGcGGugGAGGAcGGGa -3'
miRNA:   3'- cUGCUCC--------------UCCugCuCCugCUCCU-CCU- -5'
29516 5' -58.1 NC_006151.1 + 89606 0.69 0.684553
Target:  5'- -gUGAGGAcgauGGccGCGAGGAUGAGGAGc- -3'
miRNA:   3'- cuGCUCCU----CC--UGCUCCUGCUCCUCcu -5'
29516 5' -58.1 NC_006151.1 + 34652 0.69 0.684553
Target:  5'- cGCG-GGAGGGucuCGGGGGucucaggggucuCGAGGAGGGg -3'
miRNA:   3'- cUGCuCCUCCU---GCUCCU------------GCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 135123 0.69 0.684553
Target:  5'- cGCGGGGcGGGCu-GGGCGGGGAcGGGc -3'
miRNA:   3'- cUGCUCCuCCUGcuCCUGCUCCU-CCU- -5'
29516 5' -58.1 NC_006151.1 + 36847 0.69 0.674599
Target:  5'- gGACGAGGAcGGAcucggccucgcCGGGGACGGcGGGGc -3'
miRNA:   3'- -CUGCUCCU-CCU-----------GCUCCUGCUcCUCCu -5'
29516 5' -58.1 NC_006151.1 + 16590 0.68 0.743102
Target:  5'- gGugGGGGGGGAgucCGGGGGaguccGGGGGAg -3'
miRNA:   3'- -CugCUCCUCCU---GCUCCUgcu--CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 40086 0.68 0.743102
Target:  5'- gGGCGccGGGGccggccccgGCGAGGACGGGGAcucuguGGAg -3'
miRNA:   3'- -CUGCucCUCC---------UGCUCCUGCUCCU------CCU- -5'
29516 5' -58.1 NC_006151.1 + 138619 0.68 0.743102
Target:  5'- cGGCGAGGAcgccgccggGGGCGcgccGGACuGGGAGGc -3'
miRNA:   3'- -CUGCUCCU---------CCUGCu---CCUGcUCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 101212 0.67 0.780383
Target:  5'- cGCGAGGGccaGGCGuGGACGGGGcccggcGGGGg -3'
miRNA:   3'- cUGCUCCUc--CUGCuCCUGCUCC------UCCU- -5'
29516 5' -58.1 NC_006151.1 + 27558 0.67 0.780383
Target:  5'- gGGCuGGGcuGGGACGGGGGCcGGGuGGGu -3'
miRNA:   3'- -CUGcUCC--UCCUGCUCCUGcUCCuCCU- -5'
29516 5' -58.1 NC_006151.1 + 121652 0.67 0.771233
Target:  5'- cGCGGcGGAcGGGCGGGcGGaGGGGGGGAg -3'
miRNA:   3'- cUGCU-CCU-CCUGCUC-CUgCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 110533 0.67 0.771233
Target:  5'- gGACuuGGGGGACuuggGGGGACuuGGGGGGAu -3'
miRNA:   3'- -CUGcuCCUCCUG----CUCCUGc-UCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 80333 0.67 0.771233
Target:  5'- ---uGGGGGGACcGGGGCGAGGGcGGc -3'
miRNA:   3'- cugcUCCUCCUGcUCCUGCUCCU-CCu -5'
29516 5' -58.1 NC_006151.1 + 43914 0.67 0.771233
Target:  5'- --aGGGGAGG--GGGGAagagaGAGGAGGGa -3'
miRNA:   3'- cugCUCCUCCugCUCCUg----CUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 46100 0.67 0.761964
Target:  5'- -cCGAGGAGGuGCGcc-ACGAGGAGGc -3'
miRNA:   3'- cuGCUCCUCC-UGCuccUGCUCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 42088 0.67 0.761031
Target:  5'- aAUGAGGGGGugGGGuuaugcaGAUcagGGGGAGGGg -3'
miRNA:   3'- cUGCUCCUCCugCUC-------CUG---CUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 72564 0.67 0.756349
Target:  5'- cGCGcGGGAGGGUGGGGGCGGGugacagagucgggguGAGGGg -3'
miRNA:   3'- cUGC-UCCUCCUGCUCCUGCUC---------------CUCCU- -5'
29516 5' -58.1 NC_006151.1 + 41309 0.67 0.752584
Target:  5'- aGGgGGGGGGGGgGGGGugGuGGuGGu -3'
miRNA:   3'- -CUgCUCCUCCUgCUCCugCuCCuCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.