miRNA display CGI


Results 101 - 120 of 161 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29516 5' -58.1 NC_006151.1 + 131710 0.69 0.64457
Target:  5'- cGCGucgcGGGGGAUGAGGugGuAGGcGGGGu -3'
miRNA:   3'- cUGCu---CCUCCUGCUCCugC-UCC-UCCU- -5'
29516 5' -58.1 NC_006151.1 + 118420 0.69 0.64457
Target:  5'- -cCGAGGA-GACGAcGGGCGcGGAGGu -3'
miRNA:   3'- cuGCUCCUcCUGCU-CCUGCuCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 121556 0.69 0.64457
Target:  5'- gGAgGAGGAGGGgaaGGGGACGGGcGcGGGu -3'
miRNA:   3'- -CUgCUCCUCCUg--CUCCUGCUC-CuCCU- -5'
29516 5' -58.1 NC_006151.1 + 110792 0.69 0.64457
Target:  5'- cGCGGGGcuAGGGCgGGGGGCGAGGGc-- -3'
miRNA:   3'- cUGCUCC--UCCUG-CUCCUGCUCCUccu -5'
29516 5' -58.1 NC_006151.1 + 44294 0.7 0.634531
Target:  5'- aACaGGGGGGaACGGGGAUgcgaaGGGGAGGGg -3'
miRNA:   3'- cUGcUCCUCC-UGCUCCUG-----CUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 89606 0.69 0.684553
Target:  5'- -gUGAGGAcgauGGccGCGAGGAUGAGGAGc- -3'
miRNA:   3'- cuGCUCCU----CC--UGCUCCUGCUCCUCcu -5'
29516 5' -58.1 NC_006151.1 + 45311 0.68 0.701375
Target:  5'- cGCGAGGccgggaggcugggaGGGugGcGGugGAGGAcGGGa -3'
miRNA:   3'- cUGCUCC--------------UCCugCuCCugCUCCU-CCU- -5'
29516 5' -58.1 NC_006151.1 + 43914 0.67 0.771233
Target:  5'- --aGGGGAGG--GGGGAagagaGAGGAGGGa -3'
miRNA:   3'- cugCUCCUCCugCUCCUg----CUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 46100 0.67 0.761964
Target:  5'- -cCGAGGAGGuGCGcc-ACGAGGAGGc -3'
miRNA:   3'- cuGCUCCUCC-UGCuccUGCUCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 42088 0.67 0.761031
Target:  5'- aAUGAGGGGGugGGGuuaugcaGAUcagGGGGAGGGg -3'
miRNA:   3'- cUGCUCCUCCugCUC-------CUG---CUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 72564 0.67 0.756349
Target:  5'- cGCGcGGGAGGGUGGGGGCGGGugacagagucgggguGAGGGg -3'
miRNA:   3'- cUGC-UCCUCCUGCUCCUGCUC---------------CUCCU- -5'
29516 5' -58.1 NC_006151.1 + 41309 0.67 0.752584
Target:  5'- aGGgGGGGGGGGgGGGGugGuGGuGGu -3'
miRNA:   3'- -CUgCUCCUCCUgCUCCugCuCCuCCu -5'
29516 5' -58.1 NC_006151.1 + 138619 0.68 0.743102
Target:  5'- cGGCGAGGAcgccgccggGGGCGcgccGGACuGGGAGGc -3'
miRNA:   3'- -CUGCUCCU---------CCUGCu---CCUGcUCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 40086 0.68 0.743102
Target:  5'- gGGCGccGGGGccggccccgGCGAGGACGGGGAcucuguGGAg -3'
miRNA:   3'- -CUGCucCUCC---------UGCUCCUGCUCCU------CCU- -5'
29516 5' -58.1 NC_006151.1 + 16590 0.68 0.743102
Target:  5'- gGugGGGGGGGAgucCGGGGGaguccGGGGGAg -3'
miRNA:   3'- -CugCUCCUCCU---GCUCCUgcu--CCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 29789 0.68 0.743102
Target:  5'- --aGAGaGAGGA-GAGGGaGGGGAGGGg -3'
miRNA:   3'- cugCUC-CUCCUgCUCCUgCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 41185 0.68 0.733527
Target:  5'- gGugGucGAGG--GGGGugGGGGGGGAa -3'
miRNA:   3'- -CugCucCUCCugCUCCugCUCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 49631 0.68 0.723867
Target:  5'- cGCGAGuGGGGGUGGGccGugGAGGAGGu -3'
miRNA:   3'- cUGCUC-CUCCUGCUC--CugCUCCUCCu -5'
29516 5' -58.1 NC_006151.1 + 30803 0.68 0.714131
Target:  5'- cGAUGGccccGGGGGcACGcGGGCG-GGAGGAg -3'
miRNA:   3'- -CUGCU----CCUCC-UGCuCCUGCuCCUCCU- -5'
29516 5' -58.1 NC_006151.1 + 46038 0.68 0.704327
Target:  5'- cGACGGGGAagaGGAUGAGccgguaGGGGGGGGc -3'
miRNA:   3'- -CUGCUCCU---CCUGCUCcug---CUCCUCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.