Results 121 - 140 of 161 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29516 | 5' | -58.1 | NC_006151.1 | + | 36202 | 0.7 | 0.584453 |
Target: 5'- gGGCGAGaucguggugcuaGAcGACGAaGACGAGGAGGAg -3' miRNA: 3'- -CUGCUC------------CUcCUGCUcCUGCUCCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 30166 | 0.7 | 0.584453 |
Target: 5'- aGCGcGGGAGGGCgggugagaGAGGuCGGGGAGGc -3' miRNA: 3'- cUGC-UCCUCCUG--------CUCCuGCUCCUCCu -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 135514 | 0.69 | 0.653598 |
Target: 5'- -cCGAGGccaucacguccucGGcGGCGAgcgGGGCGGGGAGGAu -3' miRNA: 3'- cuGCUCC-------------UC-CUGCU---CCUGCUCCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 112570 | 0.69 | 0.6546 |
Target: 5'- gGACGAGGAGGACucgcccgcGGGcuuCGuGGAGGc -3' miRNA: 3'- -CUGCUCCUCCUGc-------UCCu--GCuCCUCCu -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 10086 | 0.69 | 0.6546 |
Target: 5'- aGGCGGgcGGAGGaagGCGGGuGCgGAGGAGGAa -3' miRNA: 3'- -CUGCU--CCUCC---UGCUCcUG-CUCCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 138619 | 0.68 | 0.743102 |
Target: 5'- cGGCGAGGAcgccgccggGGGCGcgccGGACuGGGAGGc -3' miRNA: 3'- -CUGCUCCU---------CCUGCu---CCUGcUCCUCCu -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 40086 | 0.68 | 0.743102 |
Target: 5'- gGGCGccGGGGccggccccgGCGAGGACGGGGAcucuguGGAg -3' miRNA: 3'- -CUGCucCUCC---------UGCUCCUGCUCCU------CCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 16590 | 0.68 | 0.743102 |
Target: 5'- gGugGGGGGGGAgucCGGGGGaguccGGGGGAg -3' miRNA: 3'- -CugCUCCUCCU---GCUCCUgcu--CCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 29789 | 0.68 | 0.743102 |
Target: 5'- --aGAGaGAGGA-GAGGGaGGGGAGGGg -3' miRNA: 3'- cugCUC-CUCCUgCUCCUgCUCCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 41185 | 0.68 | 0.733527 |
Target: 5'- gGugGucGAGG--GGGGugGGGGGGGAa -3' miRNA: 3'- -CugCucCUCCugCUCCugCUCCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 49631 | 0.68 | 0.723867 |
Target: 5'- cGCGAGuGGGGGUGGGccGugGAGGAGGu -3' miRNA: 3'- cUGCUC-CUCCUGCUC--CugCUCCUCCu -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 30803 | 0.68 | 0.714131 |
Target: 5'- cGAUGGccccGGGGGcACGcGGGCG-GGAGGAg -3' miRNA: 3'- -CUGCU----CCUCC-UGCuCCUGCuCCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 46038 | 0.68 | 0.704327 |
Target: 5'- cGACGGGGAagaGGAUGAGccgguaGGGGGGGGc -3' miRNA: 3'- -CUGCUCCU---CCUGCUCcug---CUCCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 45311 | 0.68 | 0.701375 |
Target: 5'- cGCGAGGccgggaggcugggaGGGugGcGGugGAGGAcGGGa -3' miRNA: 3'- cUGCUCC--------------UCCugCuCCugCUCCU-CCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 89606 | 0.69 | 0.684553 |
Target: 5'- -gUGAGGAcgauGGccGCGAGGAUGAGGAGc- -3' miRNA: 3'- cuGCUCCU----CC--UGCUCCUGCUCCUCcu -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 34652 | 0.69 | 0.684553 |
Target: 5'- cGCG-GGAGGGucuCGGGGGucucaggggucuCGAGGAGGGg -3' miRNA: 3'- cUGCuCCUCCU---GCUCCU------------GCUCCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 135123 | 0.69 | 0.684553 |
Target: 5'- cGCGGGGcGGGCu-GGGCGGGGAcGGGc -3' miRNA: 3'- cUGCUCCuCCUGcuCCUGCUCCU-CCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 36847 | 0.69 | 0.674599 |
Target: 5'- gGACGAGGAcGGAcucggccucgcCGGGGACGGcGGGGc -3' miRNA: 3'- -CUGCUCCU-CCU-----------GCUCCUGCUcCUCCu -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 1611 | 0.69 | 0.673602 |
Target: 5'- cGAUGggagaAGGAGGAgaaGGGGACcgggggaccgcggGAGGAGGAg -3' miRNA: 3'- -CUGC-----UCCUCCUg--CUCCUG-------------CUCCUCCU- -5' |
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29516 | 5' | -58.1 | NC_006151.1 | + | 10223 | 0.69 | 0.6546 |
Target: 5'- aGGCGGcugcGGAcgcGGAgGGGGGCGAGG-GGAc -3' miRNA: 3'- -CUGCU----CCU---CCUgCUCCUGCUCCuCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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