miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29517 3' -58.4 NC_006151.1 + 129328 0.66 0.833712
Target:  5'- ---aGGCGgguuagcggCCCCGGg--GCGGcCGGCg -3'
miRNA:   3'- gguaCCGCa--------GGGGCUacaCGCC-GUCG- -5'
29517 3' -58.4 NC_006151.1 + 60711 0.66 0.825488
Target:  5'- cCCGccGCGaccucggCCCCGAgGUGCcggagcacgaGGCAGCg -3'
miRNA:   3'- -GGUacCGCa------GGGGCUaCACG----------CCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 52777 0.66 0.825488
Target:  5'- gCCGcGGCGUCCUgGuc--GCGGCucuGCg -3'
miRNA:   3'- -GGUaCCGCAGGGgCuacaCGCCGu--CG- -5'
29517 3' -58.4 NC_006151.1 + 102920 0.66 0.825488
Target:  5'- --cUGGCGgCCgCCGAggaGCGGCuGCg -3'
miRNA:   3'- gguACCGCaGG-GGCUacaCGCCGuCG- -5'
29517 3' -58.4 NC_006151.1 + 87898 0.66 0.825488
Target:  5'- gCggGGCGUcacggCCCCGcccgGCGGUAGUa -3'
miRNA:   3'- gGuaCCGCA-----GGGGCuacaCGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 94771 0.66 0.825488
Target:  5'- gCCGcaGCGUCUCC-AUGaGCGGCAGg -3'
miRNA:   3'- -GGUacCGCAGGGGcUACaCGCCGUCg -5'
29517 3' -58.4 NC_006151.1 + 119357 0.67 0.763621
Target:  5'- gCCAUGGaccaCCUGGUGaugGCGuGCGGCu -3'
miRNA:   3'- -GGUACCgcagGGGCUACa--CGC-CGUCG- -5'
29517 3' -58.4 NC_006151.1 + 19938 0.67 0.763621
Target:  5'- gCAUGGUcucaaCCCCGGUGUGUcgagacucgcggGGguGCc -3'
miRNA:   3'- gGUACCGca---GGGGCUACACG------------CCguCG- -5'
29517 3' -58.4 NC_006151.1 + 17372 0.67 0.762691
Target:  5'- gCCGUGGgGUCggaccgugUCCGcacgacggggcgcGUGgcgcGCGGCAGCa -3'
miRNA:   3'- -GGUACCgCAG--------GGGC-------------UACa---CGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 96702 0.67 0.754267
Target:  5'- ----uGCGUCCgcgCCGggG-GCGGCGGCg -3'
miRNA:   3'- gguacCGCAGG---GGCuaCaCGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 48109 0.67 0.754267
Target:  5'- cUCGUGGCGgUgCUGGUGUuuuuuuCGGCGGCg -3'
miRNA:   3'- -GGUACCGCaGgGGCUACAc-----GCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 114689 0.67 0.754267
Target:  5'- cUCGUGcucgaagggcGCGUCCCCGggG-GCGGUuuccggaauaaAGCg -3'
miRNA:   3'- -GGUAC----------CGCAGGGGCuaCaCGCCG-----------UCG- -5'
29517 3' -58.4 NC_006151.1 + 2689 0.67 0.763621
Target:  5'- ---cGGCucggCCCCGggGUGCaGGCGGg -3'
miRNA:   3'- gguaCCGca--GGGGCuaCACG-CCGUCg -5'
29517 3' -58.4 NC_006151.1 + 41051 0.67 0.772863
Target:  5'- ---gGGgGUCCuuGAUGgugGUGGUGGUg -3'
miRNA:   3'- gguaCCgCAGGggCUACa--CGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 106776 0.67 0.772863
Target:  5'- gCGUGaGCG-CCUgGAccUGgccGCGGCGGCg -3'
miRNA:   3'- gGUAC-CGCaGGGgCU--ACa--CGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 104790 0.67 0.772863
Target:  5'- gCCAUGcGCGcgcucgugcgCCgCGAccUG-GCGGCGGCg -3'
miRNA:   3'- -GGUAC-CGCa---------GGgGCU--ACaCGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 51976 0.67 0.781985
Target:  5'- uCCAgcgaGGCGagcagCUCCGcgGUGCcGGCGuGCa -3'
miRNA:   3'- -GGUa---CCGCa----GGGGCuaCACG-CCGU-CG- -5'
29517 3' -58.4 NC_006151.1 + 81243 0.67 0.781985
Target:  5'- --cUGGCGcCCCCGcgcaggGgcaggGCGaGCAGCg -3'
miRNA:   3'- gguACCGCaGGGGCua----Ca----CGC-CGUCG- -5'
29517 3' -58.4 NC_006151.1 + 114395 0.67 0.781985
Target:  5'- aCGUGGUGuUCCCCGAgaaGU-CGGU-GCa -3'
miRNA:   3'- gGUACCGC-AGGGGCUa--CAcGCCGuCG- -5'
29517 3' -58.4 NC_006151.1 + 50666 0.67 0.754267
Target:  5'- gUCGUGcGCGgccgcacCCCCGcgccgccGCGGCAGCg -3'
miRNA:   3'- -GGUAC-CGCa------GGGGCuaca---CGCCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.