miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29517 3' -58.4 NC_006151.1 + 111225 0.69 0.626373
Target:  5'- gCCGgcgaGGCGccgcagCCCCaggagGGUGUGCaGCAGCg -3'
miRNA:   3'- -GGUa---CCGCa-----GGGG-----CUACACGcCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 97453 0.68 0.715901
Target:  5'- ---gGGCGUCgCCGAgcucggGCaGGCGGCu -3'
miRNA:   3'- gguaCCGCAGgGGCUaca---CG-CCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 86422 0.68 0.715901
Target:  5'- ---cGGCGUCCCUGuccucGCGGCgccuGGCg -3'
miRNA:   3'- gguaCCGCAGGGGCuaca-CGCCG----UCG- -5'
29517 3' -58.4 NC_006151.1 + 86837 0.68 0.715901
Target:  5'- gCCAUGGCaG-CCCCGccGaGC-GCAGCg -3'
miRNA:   3'- -GGUACCG-CaGGGGCuaCaCGcCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 42655 0.68 0.715901
Target:  5'- gCcgGGCaUCCCCGccgcggggauGUGUGCGuGCgAGCc -3'
miRNA:   3'- gGuaCCGcAGGGGC----------UACACGC-CG-UCG- -5'
29517 3' -58.4 NC_006151.1 + 50359 0.68 0.706116
Target:  5'- cCCGccGCGUCUCCGccG-GCGGgGGCg -3'
miRNA:   3'- -GGUacCGCAGGGGCuaCaCGCCgUCG- -5'
29517 3' -58.4 NC_006151.1 + 90735 0.68 0.706116
Target:  5'- aCgGUGGCGgcggcgCCCuCGggG-GCGGCGGg -3'
miRNA:   3'- -GgUACCGCa-----GGG-GCuaCaCGCCGUCg -5'
29517 3' -58.4 NC_006151.1 + 90703 0.68 0.706116
Target:  5'- ---cGGCGgacgcgcccgCCCCGcag-GCGGCGGCg -3'
miRNA:   3'- gguaCCGCa---------GGGGCuacaCGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 54061 0.68 0.705134
Target:  5'- -gGUGGCGUUgguggcgcgcggaCCCucUGcgGCGGCGGCg -3'
miRNA:   3'- ggUACCGCAG-------------GGGcuACa-CGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 38184 0.68 0.725617
Target:  5'- aCCGUGGCG-CCgCUGGUGcGCuaCAGCg -3'
miRNA:   3'- -GGUACCGCaGG-GGCUACaCGccGUCG- -5'
29517 3' -58.4 NC_006151.1 + 68404 0.68 0.703169
Target:  5'- uCCAUGGCGcgcgcccgccccccUcgCCCCGcuacacGCGGCGGCa -3'
miRNA:   3'- -GGUACCGC--------------A--GGGGCuaca--CGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 77876 0.68 0.686375
Target:  5'- ---cGGCaUCCCCGgcGUGCGccccccgcucaGCGGCg -3'
miRNA:   3'- gguaCCGcAGGGGCuaCACGC-----------CGUCG- -5'
29517 3' -58.4 NC_006151.1 + 64386 0.68 0.696271
Target:  5'- gCCGUGGCcagCCCGcgGcGCaGCAGCg -3'
miRNA:   3'- -GGUACCGcagGGGCuaCaCGcCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 84013 0.67 0.735256
Target:  5'- aCCucggGGUGcgccgCCCCGAcugcgUGUGCGuGguGCg -3'
miRNA:   3'- -GGua--CCGCa----GGGGCU-----ACACGC-CguCG- -5'
29517 3' -58.4 NC_006151.1 + 104790 0.67 0.772863
Target:  5'- gCCAUGcGCGcgcucgugcgCCgCGAccUG-GCGGCGGCg -3'
miRNA:   3'- -GGUAC-CGCa---------GGgGCU--ACaCGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 65390 0.67 0.781985
Target:  5'- cCCcgGGCGcgCCgUGAgcgaGCGGCGGUa -3'
miRNA:   3'- -GGuaCCGCa-GGgGCUaca-CGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 114395 0.67 0.781985
Target:  5'- aCGUGGUGuUCCCCGAgaaGU-CGGU-GCa -3'
miRNA:   3'- gGUACCGC-AGGGGCUa--CAcGCCGuCG- -5'
29517 3' -58.4 NC_006151.1 + 81243 0.67 0.781985
Target:  5'- --cUGGCGcCCCCGcgcaggGgcaggGCGaGCAGCg -3'
miRNA:   3'- gguACCGCaGGGGCua----Ca----CGC-CGUCG- -5'
29517 3' -58.4 NC_006151.1 + 51976 0.67 0.781985
Target:  5'- uCCAgcgaGGCGagcagCUCCGcgGUGCcGGCGuGCa -3'
miRNA:   3'- -GGUa---CCGCa----GGGGCuaCACG-CCGU-CG- -5'
29517 3' -58.4 NC_006151.1 + 103822 0.67 0.735256
Target:  5'- gCCGUGGCGgcggCCguggaGAUGcucggGCGGCuGCg -3'
miRNA:   3'- -GGUACCGCa---GGgg---CUACa----CGCCGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.