Results 61 - 80 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29517 | 3' | -58.4 | NC_006151.1 | + | 51976 | 0.67 | 0.781985 |
Target: 5'- uCCAgcgaGGCGagcagCUCCGcgGUGCcGGCGuGCa -3' miRNA: 3'- -GGUa---CCGCa----GGGGCuaCACG-CCGU-CG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 81243 | 0.67 | 0.781985 |
Target: 5'- --cUGGCGcCCCCGcgcaggGgcaggGCGaGCAGCg -3' miRNA: 3'- gguACCGCaGGGGCua----Ca----CGC-CGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 114395 | 0.67 | 0.781985 |
Target: 5'- aCGUGGUGuUCCCCGAgaaGU-CGGU-GCa -3' miRNA: 3'- gGUACCGC-AGGGGCUa--CAcGCCGuCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 65390 | 0.67 | 0.781985 |
Target: 5'- cCCcgGGCGcgCCgUGAgcgaGCGGCGGUa -3' miRNA: 3'- -GGuaCCGCa-GGgGCUaca-CGCCGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 17372 | 0.67 | 0.762691 |
Target: 5'- gCCGUGGgGUCggaccgugUCCGcacgacggggcgcGUGgcgcGCGGCAGCa -3' miRNA: 3'- -GGUACCgCAG--------GGGC-------------UACa---CGCCGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 96702 | 0.67 | 0.754267 |
Target: 5'- ----uGCGUCCgcgCCGggG-GCGGCGGCg -3' miRNA: 3'- gguacCGCAGG---GGCuaCaCGCCGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 115000 | 0.67 | 0.731411 |
Target: 5'- cCCGUGGCGcauggCCagcuugugguagaCGGUgagGUGCGGCAGg -3' miRNA: 3'- -GGUACCGCa----GGg------------GCUA---CACGCCGUCg -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 84013 | 0.67 | 0.735256 |
Target: 5'- aCCucggGGUGcgccgCCCCGAcugcgUGUGCGuGguGCg -3' miRNA: 3'- -GGua--CCGCa----GGGGCU-----ACACGC-CguCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 103822 | 0.67 | 0.735256 |
Target: 5'- gCCGUGGCGgcggCCguggaGAUGcucggGCGGCuGCg -3' miRNA: 3'- -GGUACCGCa---GGgg---CUACa----CGCCGuCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 127973 | 0.67 | 0.735256 |
Target: 5'- ---aGGgGUCCaCGuacucGUGCGGCGGCu -3' miRNA: 3'- gguaCCgCAGGgGCua---CACGCCGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 4500 | 0.67 | 0.735256 |
Target: 5'- gCCAcGGCGcUCaCCGc-GUGCGGCAGg -3' miRNA: 3'- -GGUaCCGC-AGgGGCuaCACGCCGUCg -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 54285 | 0.67 | 0.735256 |
Target: 5'- aCUcgGuGCGcUCCaCCGAggccgccGUGCGGCAGa -3' miRNA: 3'- -GGuaC-CGC-AGG-GGCUa------CACGCCGUCg -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 109258 | 0.67 | 0.735256 |
Target: 5'- uCCGcUGGCGgCCCCGAcGUcGCuGGCcGCc -3' miRNA: 3'- -GGU-ACCGCaGGGGCUaCA-CG-CCGuCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 114689 | 0.67 | 0.754267 |
Target: 5'- cUCGUGcucgaagggcGCGUCCCCGggG-GCGGUuuccggaauaaAGCg -3' miRNA: 3'- -GGUAC----------CGCAGGGGCuaCaCGCCG-----------UCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 118923 | 0.67 | 0.735256 |
Target: 5'- gCAUGGCGUCCgucaugagcgCCGAc--GCGGC-GCu -3' miRNA: 3'- gGUACCGCAGG----------GGCUacaCGCCGuCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 83264 | 0.67 | 0.744809 |
Target: 5'- gCCAgcGGCG-CCCCGAgcucaGGUAGCg -3' miRNA: 3'- -GGUa-CCGCaGGGGCUacacgCCGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 48109 | 0.67 | 0.754267 |
Target: 5'- cUCGUGGCGgUgCUGGUGUuuuuuuCGGCGGCg -3' miRNA: 3'- -GGUACCGCaGgGGCUACAc-----GCCGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 21594 | 0.67 | 0.744809 |
Target: 5'- uCgAUGGCGUa--CGgcGUgGCGGCGGCg -3' miRNA: 3'- -GgUACCGCAgggGCuaCA-CGCCGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 38124 | 0.66 | 0.817095 |
Target: 5'- cCCggGGCcggCCCgGccGaGCGGCGGCa -3' miRNA: 3'- -GGuaCCGca-GGGgCuaCaCGCCGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 44182 | 0.66 | 0.817095 |
Target: 5'- aCCGcGG-GUCgCCGuccggGCGGCGGCg -3' miRNA: 3'- -GGUaCCgCAGgGGCuaca-CGCCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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