miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29517 3' -58.4 NC_006151.1 + 96199 0.71 0.516794
Target:  5'- gCCAUGgggcgccGCGUCgCCG-UG-GCGGCGGCc -3'
miRNA:   3'- -GGUAC-------CGCAGgGGCuACaCGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 123523 0.71 0.517753
Target:  5'- uUCAUGGUGgCCCgCGAUugGUGCGuCAGCg -3'
miRNA:   3'- -GGUACCGCaGGG-GCUA--CACGCcGUCG- -5'
29517 3' -58.4 NC_006151.1 + 96012 0.71 0.517753
Target:  5'- -gAUGGCGcgcaccgccUCCUCGGUGgugcGCGGCAGg -3'
miRNA:   3'- ggUACCGC---------AGGGGCUACa---CGCCGUCg -5'
29517 3' -58.4 NC_006151.1 + 28092 0.71 0.54683
Target:  5'- gUCcgGGCGUCCUCGAgcgGgGcGCGGCu -3'
miRNA:   3'- -GGuaCCGCAGGGGCUacaCgC-CGUCG- -5'
29517 3' -58.4 NC_006151.1 + 4912 0.71 0.556641
Target:  5'- gCCAgGGC-UCCCCGAgcgGgGUGaGCAGCg -3'
miRNA:   3'- -GGUaCCGcAGGGGCUa--CaCGC-CGUCG- -5'
29517 3' -58.4 NC_006151.1 + 128206 0.71 0.556641
Target:  5'- uCCAUGGCG-CCCCaGgcGUGCGaCgAGCu -3'
miRNA:   3'- -GGUACCGCaGGGG-CuaCACGCcG-UCG- -5'
29517 3' -58.4 NC_006151.1 + 69636 0.7 0.576406
Target:  5'- ---cGGCGUCCCgCGc-GUGCGGCGccGCc -3'
miRNA:   3'- gguaCCGCAGGG-GCuaCACGCCGU--CG- -5'
29517 3' -58.4 NC_006151.1 + 127724 0.7 0.576406
Target:  5'- gCCccGGCGUCCCCGuc--GCgGGCGGg -3'
miRNA:   3'- -GGuaCCGCAGGGGCuacaCG-CCGUCg -5'
29517 3' -58.4 NC_006151.1 + 123884 0.7 0.586349
Target:  5'- --cUGGCGcucgccgcggCCCCGccGUGCGGCgcGGCg -3'
miRNA:   3'- gguACCGCa---------GGGGCuaCACGCCG--UCG- -5'
29517 3' -58.4 NC_006151.1 + 44716 0.7 0.605323
Target:  5'- cCCAUGGUGUCCuCCGuGUGaagaagccgagcaUGCGcGCGGg -3'
miRNA:   3'- -GGUACCGCAGG-GGC-UAC-------------ACGC-CGUCg -5'
29517 3' -58.4 NC_006151.1 + 96664 0.7 0.606324
Target:  5'- gCCcgGGCGacgUCCUCGGg--GCaGGCGGCg -3'
miRNA:   3'- -GGuaCCGC---AGGGGCUacaCG-CCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 125575 0.69 0.626373
Target:  5'- uCCAUGcGCGUgCCCGgcGagcGCGGCAcGUg -3'
miRNA:   3'- -GGUAC-CGCAgGGGCuaCa--CGCCGU-CG- -5'
29517 3' -58.4 NC_006151.1 + 111225 0.69 0.626373
Target:  5'- gCCGgcgaGGCGccgcagCCCCaggagGGUGUGCaGCAGCg -3'
miRNA:   3'- -GGUa---CCGCa-----GGGG-----CUACACGcCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 3678 0.69 0.646438
Target:  5'- cCCggGGCGgcgggCCCCGg---GCGcGCGGCg -3'
miRNA:   3'- -GGuaCCGCa----GGGGCuacaCGC-CGUCG- -5'
29517 3' -58.4 NC_006151.1 + 137656 0.69 0.646438
Target:  5'- cCCGUcccGGCGgacgagCgCCCGccGUGCGGCuGCc -3'
miRNA:   3'- -GGUA---CCGCa-----G-GGGCuaCACGCCGuCG- -5'
29517 3' -58.4 NC_006151.1 + 79760 0.69 0.646438
Target:  5'- cCCGcGG-GUCCCCGGUccaCGGCGGCc -3'
miRNA:   3'- -GGUaCCgCAGGGGCUAcacGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 15082 0.69 0.646438
Target:  5'- cCCcUGGCG-CCCCGAcacGCGGC-GCc -3'
miRNA:   3'- -GGuACCGCaGGGGCUacaCGCCGuCG- -5'
29517 3' -58.4 NC_006151.1 + 90602 0.69 0.656458
Target:  5'- uCCGUaGGCGUggcccccuucCCCCGAg--GCGGCccgcgGGCg -3'
miRNA:   3'- -GGUA-CCGCA----------GGGGCUacaCGCCG-----UCG- -5'
29517 3' -58.4 NC_006151.1 + 138189 0.69 0.656458
Target:  5'- gCCAUGGCG-CCC--GUGcUGCGGCAc- -3'
miRNA:   3'- -GGUACCGCaGGGgcUAC-ACGCCGUcg -5'
29517 3' -58.4 NC_006151.1 + 65749 0.69 0.664461
Target:  5'- gCCGggaGGCcucguccccGUCCCCGucgccgccgGCGGCGGCg -3'
miRNA:   3'- -GGUa--CCG---------CAGGGGCuaca-----CGCCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.