Results 101 - 104 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29517 | 3' | -58.4 | NC_006151.1 | + | 82670 | 0.66 | 0.833712 |
Target: 5'- cCCugcGGCG-CgCCGcgGgcgaggGCGGCGGCc -3' miRNA: 3'- -GGua-CCGCaGgGGCuaCa-----CGCCGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 66773 | 0.66 | 0.833712 |
Target: 5'- ---cGGcCGcCCUCGGgacgGCGGCGGCg -3' miRNA: 3'- gguaCC-GCaGGGGCUaca-CGCCGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 129328 | 0.66 | 0.833712 |
Target: 5'- ---aGGCGgguuagcggCCCCGGg--GCGGcCGGCg -3' miRNA: 3'- gguaCCGCa--------GGGGCUacaCGCC-GUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 30919 | 0.66 | 0.836953 |
Target: 5'- cCCGcgGGCGgcccgcgcggaucgCCCgCGcgGUaucGCGGCGGCc -3' miRNA: 3'- -GGUa-CCGCa-------------GGG-GCuaCA---CGCCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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