Results 1 - 20 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29517 | 3' | -58.4 | NC_006151.1 | + | 2219 | 0.74 | 0.360039 |
Target: 5'- uCCAcGGCGcCCCCG----GCGGCGGCg -3' miRNA: 3'- -GGUaCCGCaGGGGCuacaCGCCGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 2689 | 0.67 | 0.763621 |
Target: 5'- ---cGGCucggCCCCGggGUGCaGGCGGg -3' miRNA: 3'- gguaCCGca--GGGGCuaCACG-CCGUCg -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 3621 | 0.72 | 0.461623 |
Target: 5'- gCCGUGGcCGUCCCCGcgGaG-GGCcGCg -3' miRNA: 3'- -GGUACC-GCAGGGGCuaCaCgCCGuCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 3678 | 0.69 | 0.646438 |
Target: 5'- cCCggGGCGgcgggCCCCGg---GCGcGCGGCg -3' miRNA: 3'- -GGuaCCGCa----GGGGCuacaCGC-CGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 4500 | 0.67 | 0.735256 |
Target: 5'- gCCAcGGCGcUCaCCGc-GUGCGGCAGg -3' miRNA: 3'- -GGUaCCGC-AGgGGCuaCACGCCGUCg -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 4548 | 1.13 | 0.000888 |
Target: 5'- gCCAUGGCGUCCCCGAUGUGCGGCAGCg -3' miRNA: 3'- -GGUACCGCAGGGGCUACACGCCGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 4912 | 0.71 | 0.556641 |
Target: 5'- gCCAgGGC-UCCCCGAgcgGgGUGaGCAGCg -3' miRNA: 3'- -GGUaCCGcAGGGGCUa--CaCGC-CGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 7514 | 0.66 | 0.799831 |
Target: 5'- -uGUGGUgGUCUCUGuguUGUGUGGUGGUa -3' miRNA: 3'- ggUACCG-CAGGGGCu--ACACGCCGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 9042 | 0.66 | 0.80854 |
Target: 5'- gCCggGGCG-CCCCGc-GUGCuccGGgGGCg -3' miRNA: 3'- -GGuaCCGCaGGGGCuaCACG---CCgUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 10642 | 0.66 | 0.817095 |
Target: 5'- gCCGgcgcGGCaUCCCCGcccagGCGGCGGg -3' miRNA: 3'- -GGUa---CCGcAGGGGCuaca-CGCCGUCg -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 13970 | 0.66 | 0.814545 |
Target: 5'- gCCAUGggggagccgggcccGCGUCCCCGGggcccacgUGUGaGGCcccGGCc -3' miRNA: 3'- -GGUAC--------------CGCAGGGGCU--------ACACgCCG---UCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 15082 | 0.69 | 0.646438 |
Target: 5'- cCCcUGGCG-CCCCGAcacGCGGC-GCc -3' miRNA: 3'- -GGuACCGCaGGGGCUacaCGCCGuCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 17372 | 0.67 | 0.762691 |
Target: 5'- gCCGUGGgGUCggaccgugUCCGcacgacggggcgcGUGgcgcGCGGCAGCa -3' miRNA: 3'- -GGUACCgCAG--------GGGC-------------UACa---CGCCGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 18523 | 0.69 | 0.66646 |
Target: 5'- gCAUGcGCGUCCCCGccc-GCGuCGGCa -3' miRNA: 3'- gGUAC-CGCAGGGGCuacaCGCcGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 19938 | 0.67 | 0.763621 |
Target: 5'- gCAUGGUcucaaCCCCGGUGUGUcgagacucgcggGGguGCc -3' miRNA: 3'- gGUACCGca---GGGGCUACACG------------CCguCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 20300 | 0.74 | 0.367889 |
Target: 5'- cCCcgGGCGcCCgCCG-UGgcguugGCGGCGGCg -3' miRNA: 3'- -GGuaCCGCaGG-GGCuACa-----CGCCGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 21594 | 0.67 | 0.744809 |
Target: 5'- uCgAUGGCGUa--CGgcGUgGCGGCGGCg -3' miRNA: 3'- -GgUACCGCAgggGCuaCA-CGCCGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 23698 | 0.77 | 0.244767 |
Target: 5'- gCAUGGCGUCCCCGG-----GGCAGCc -3' miRNA: 3'- gGUACCGCAGGGGCUacacgCCGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 28092 | 0.71 | 0.54683 |
Target: 5'- gUCcgGGCGUCCUCGAgcgGgGcGCGGCu -3' miRNA: 3'- -GGuaCCGCAGGGGCUacaCgC-CGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 28589 | 0.73 | 0.426038 |
Target: 5'- gCCGgcGCGUCCCCGGaG-GCGGguGCc -3' miRNA: 3'- -GGUacCGCAGGGGCUaCaCGCCguCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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