miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29517 3' -58.4 NC_006151.1 + 28870 0.73 0.426038
Target:  5'- gCCGgcGCGUCCCCGGaG-GCGGguGCc -3'
miRNA:   3'- -GGUacCGCAGGGGCUaCaCGCCguCG- -5'
29517 3' -58.4 NC_006151.1 + 30919 0.66 0.836953
Target:  5'- cCCGcgGGCGgcccgcgcggaucgCCCgCGcgGUaucGCGGCGGCc -3'
miRNA:   3'- -GGUa-CCGCa-------------GGG-GCuaCA---CGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 36000 0.71 0.508196
Target:  5'- gCAUcGCGUccggCCCCGAcG-GCGGCAGCc -3'
miRNA:   3'- gGUAcCGCA----GGGGCUaCaCGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 36625 0.66 0.817095
Target:  5'- gCCGgucucGGCG--CCCGgcG-GCGGCGGCg -3'
miRNA:   3'- -GGUa----CCGCagGGGCuaCaCGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 38124 0.66 0.817095
Target:  5'- cCCggGGCcggCCCgGccGaGCGGCGGCa -3'
miRNA:   3'- -GGuaCCGca-GGGgCuaCaCGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 38184 0.68 0.725617
Target:  5'- aCCGUGGCG-CCgCUGGUGcGCuaCAGCg -3'
miRNA:   3'- -GGUACCGCaGG-GGCUACaCGccGUCG- -5'
29517 3' -58.4 NC_006151.1 + 41051 0.67 0.772863
Target:  5'- ---gGGgGUCCuuGAUGgugGUGGUGGUg -3'
miRNA:   3'- gguaCCgCAGGggCUACa--CGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 42655 0.68 0.715901
Target:  5'- gCcgGGCaUCCCCGccgcggggauGUGUGCGuGCgAGCc -3'
miRNA:   3'- gGuaCCGcAGGGGC----------UACACGC-CG-UCG- -5'
29517 3' -58.4 NC_006151.1 + 44182 0.66 0.817095
Target:  5'- aCCGcGG-GUCgCCGuccggGCGGCGGCg -3'
miRNA:   3'- -GGUaCCgCAGgGGCuaca-CGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 44716 0.7 0.605323
Target:  5'- cCCAUGGUGUCCuCCGuGUGaagaagccgagcaUGCGcGCGGg -3'
miRNA:   3'- -GGUACCGCAGG-GGC-UAC-------------ACGC-CGUCg -5'
29517 3' -58.4 NC_006151.1 + 48109 0.67 0.754267
Target:  5'- cUCGUGGCGgUgCUGGUGUuuuuuuCGGCGGCg -3'
miRNA:   3'- -GGUACCGCaGgGGCUACAc-----GCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 50359 0.68 0.706116
Target:  5'- cCCGccGCGUCUCCGccG-GCGGgGGCg -3'
miRNA:   3'- -GGUacCGCAGGGGCuaCaCGCCgUCG- -5'
29517 3' -58.4 NC_006151.1 + 50666 0.67 0.754267
Target:  5'- gUCGUGcGCGgccgcacCCCCGcgccgccGCGGCAGCg -3'
miRNA:   3'- -GGUAC-CGCa------GGGGCuaca---CGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 51976 0.67 0.781985
Target:  5'- uCCAgcgaGGCGagcagCUCCGcgGUGCcGGCGuGCa -3'
miRNA:   3'- -GGUa---CCGCa----GGGGCuaCACG-CCGU-CG- -5'
29517 3' -58.4 NC_006151.1 + 52777 0.66 0.825488
Target:  5'- gCCGcGGCGUCCUgGuc--GCGGCucuGCg -3'
miRNA:   3'- -GGUaCCGCAGGGgCuacaCGCCGu--CG- -5'
29517 3' -58.4 NC_006151.1 + 54061 0.68 0.705134
Target:  5'- -gGUGGCGUUgguggcgcgcggaCCCucUGcgGCGGCGGCg -3'
miRNA:   3'- ggUACCGCAG-------------GGGcuACa-CGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 54285 0.67 0.735256
Target:  5'- aCUcgGuGCGcUCCaCCGAggccgccGUGCGGCAGa -3'
miRNA:   3'- -GGuaC-CGC-AGG-GGCUa------CACGCCGUCg -5'
29517 3' -58.4 NC_006151.1 + 54621 0.78 0.233427
Target:  5'- gCcgGGCGcgCCCCGggGggaaGCGGCGGCg -3'
miRNA:   3'- gGuaCCGCa-GGGGCuaCa---CGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 58407 0.75 0.315429
Target:  5'- gCCAUGGCGcgCagCUGGgcGUGCGGCAGCc -3'
miRNA:   3'- -GGUACCGCa-Gg-GGCUa-CACGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 60711 0.66 0.825488
Target:  5'- cCCGccGCGaccucggCCCCGAgGUGCcggagcacgaGGCAGCg -3'
miRNA:   3'- -GGUacCGCa------GGGGCUaCACG----------CCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.