miRNA display CGI


Results 61 - 80 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29517 3' -58.4 NC_006151.1 + 86422 0.68 0.715901
Target:  5'- ---cGGCGUCCCUGuccucGCGGCgccuGGCg -3'
miRNA:   3'- gguaCCGCAGGGGCuaca-CGCCG----UCG- -5'
29517 3' -58.4 NC_006151.1 + 86837 0.68 0.715901
Target:  5'- gCCAUGGCaG-CCCCGccGaGC-GCAGCg -3'
miRNA:   3'- -GGUACCG-CaGGGGCuaCaCGcCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 87898 0.66 0.825488
Target:  5'- gCggGGCGUcacggCCCCGcccgGCGGUAGUa -3'
miRNA:   3'- gGuaCCGCA-----GGGGCuacaCGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 90602 0.69 0.656458
Target:  5'- uCCGUaGGCGUggcccccuucCCCCGAg--GCGGCccgcgGGCg -3'
miRNA:   3'- -GGUA-CCGCA----------GGGGCUacaCGCCG-----UCG- -5'
29517 3' -58.4 NC_006151.1 + 90703 0.68 0.706116
Target:  5'- ---cGGCGgacgcgcccgCCCCGcag-GCGGCGGCg -3'
miRNA:   3'- gguaCCGCa---------GGGGCuacaCGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 90735 0.68 0.706116
Target:  5'- aCgGUGGCGgcggcgCCCuCGggG-GCGGCGGg -3'
miRNA:   3'- -GgUACCGCa-----GGG-GCuaCaCGCCGUCg -5'
29517 3' -58.4 NC_006151.1 + 91846 0.73 0.434783
Target:  5'- ---cGGCG-CCUCGGUGUGCGaGCGGa -3'
miRNA:   3'- gguaCCGCaGGGGCUACACGC-CGUCg -5'
29517 3' -58.4 NC_006151.1 + 94272 0.66 0.80854
Target:  5'- uCCuUGGCGUCgUCGcccaGCGGCAGg -3'
miRNA:   3'- -GGuACCGCAGgGGCuacaCGCCGUCg -5'
29517 3' -58.4 NC_006151.1 + 94771 0.66 0.825488
Target:  5'- gCCGcaGCGUCUCC-AUGaGCGGCAGg -3'
miRNA:   3'- -GGUacCGCAGGGGcUACaCGCCGUCg -5'
29517 3' -58.4 NC_006151.1 + 95273 0.66 0.833712
Target:  5'- aUCAUGGCGUUgaCGAaga-CGGCGGCg -3'
miRNA:   3'- -GGUACCGCAGggGCUacacGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 96012 0.71 0.517753
Target:  5'- -gAUGGCGcgcaccgccUCCUCGGUGgugcGCGGCAGg -3'
miRNA:   3'- ggUACCGC---------AGGGGCUACa---CGCCGUCg -5'
29517 3' -58.4 NC_006151.1 + 96199 0.71 0.516794
Target:  5'- gCCAUGgggcgccGCGUCgCCG-UG-GCGGCGGCc -3'
miRNA:   3'- -GGUAC-------CGCAGgGGCuACaCGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 96664 0.7 0.606324
Target:  5'- gCCcgGGCGacgUCCUCGGg--GCaGGCGGCg -3'
miRNA:   3'- -GGuaCCGC---AGGGGCUacaCG-CCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 96702 0.67 0.754267
Target:  5'- ----uGCGUCCgcgCCGggG-GCGGCGGCg -3'
miRNA:   3'- gguacCGCAGG---GGCuaCaCGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 97453 0.68 0.715901
Target:  5'- ---gGGCGUCgCCGAgcucggGCaGGCGGCu -3'
miRNA:   3'- gguaCCGCAGgGGCUaca---CG-CCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 102920 0.66 0.825488
Target:  5'- --cUGGCGgCCgCCGAggaGCGGCuGCg -3'
miRNA:   3'- gguACCGCaGG-GGCUacaCGCCGuCG- -5'
29517 3' -58.4 NC_006151.1 + 103822 0.67 0.735256
Target:  5'- gCCGUGGCGgcggCCguggaGAUGcucggGCGGCuGCg -3'
miRNA:   3'- -GGUACCGCa---GGgg---CUACa----CGCCGuCG- -5'
29517 3' -58.4 NC_006151.1 + 104790 0.67 0.772863
Target:  5'- gCCAUGcGCGcgcucgugcgCCgCGAccUG-GCGGCGGCg -3'
miRNA:   3'- -GGUAC-CGCa---------GGgGCU--ACaCGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 106776 0.67 0.772863
Target:  5'- gCGUGaGCG-CCUgGAccUGgccGCGGCGGCg -3'
miRNA:   3'- gGUAC-CGCaGGGgCU--ACa--CGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 109258 0.67 0.735256
Target:  5'- uCCGcUGGCGgCCCCGAcGUcGCuGGCcGCc -3'
miRNA:   3'- -GGU-ACCGCaGGGGCUaCA-CG-CCGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.