miRNA display CGI


Results 81 - 100 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29517 3' -58.4 NC_006151.1 + 111225 0.69 0.626373
Target:  5'- gCCGgcgaGGCGccgcagCCCCaggagGGUGUGCaGCAGCg -3'
miRNA:   3'- -GGUa---CCGCa-----GGGG-----CUACACGcCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 112069 0.66 0.824656
Target:  5'- -gGUGGUGgggcugguggagcUCCCCGGgucggGCGGCGGa -3'
miRNA:   3'- ggUACCGC-------------AGGGGCUaca--CGCCGUCg -5'
29517 3' -58.4 NC_006151.1 + 114395 0.67 0.781985
Target:  5'- aCGUGGUGuUCCCCGAgaaGU-CGGU-GCa -3'
miRNA:   3'- gGUACCGC-AGGGGCUa--CAcGCCGuCG- -5'
29517 3' -58.4 NC_006151.1 + 114689 0.67 0.754267
Target:  5'- cUCGUGcucgaagggcGCGUCCCCGggG-GCGGUuuccggaauaaAGCg -3'
miRNA:   3'- -GGUAC----------CGCAGGGGCuaCaCGCCG-----------UCG- -5'
29517 3' -58.4 NC_006151.1 + 115000 0.67 0.731411
Target:  5'- cCCGUGGCGcauggCCagcuugugguagaCGGUgagGUGCGGCAGg -3'
miRNA:   3'- -GGUACCGCa----GGg------------GCUA---CACGCCGUCg -5'
29517 3' -58.4 NC_006151.1 + 118923 0.67 0.735256
Target:  5'- gCAUGGCGUCCgucaugagcgCCGAc--GCGGC-GCu -3'
miRNA:   3'- gGUACCGCAGG----------GGCUacaCGCCGuCG- -5'
29517 3' -58.4 NC_006151.1 + 119357 0.67 0.763621
Target:  5'- gCCAUGGaccaCCUGGUGaugGCGuGCGGCu -3'
miRNA:   3'- -GGUACCgcagGGGCUACa--CGC-CGUCG- -5'
29517 3' -58.4 NC_006151.1 + 122454 0.66 0.817095
Target:  5'- ---cGGCGUCCaCGgcG-GCGGCGGg -3'
miRNA:   3'- gguaCCGCAGGgGCuaCaCGCCGUCg -5'
29517 3' -58.4 NC_006151.1 + 123523 0.71 0.517753
Target:  5'- uUCAUGGUGgCCCgCGAUugGUGCGuCAGCg -3'
miRNA:   3'- -GGUACCGCaGGG-GCUA--CACGCcGUCG- -5'
29517 3' -58.4 NC_006151.1 + 123610 0.66 0.817095
Target:  5'- gCC-UGGCGauauaUCCgCGAgcugGUGCuGGCGGUu -3'
miRNA:   3'- -GGuACCGC-----AGGgGCUa---CACG-CCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 123884 0.7 0.586349
Target:  5'- --cUGGCGcucgccgcggCCCCGccGUGCGGCgcGGCg -3'
miRNA:   3'- gguACCGCa---------GGGGCuaCACGCCG--UCG- -5'
29517 3' -58.4 NC_006151.1 + 125575 0.69 0.626373
Target:  5'- uCCAUGcGCGUgCCCGgcGagcGCGGCAcGUg -3'
miRNA:   3'- -GGUAC-CGCAgGGGCuaCa--CGCCGU-CG- -5'
29517 3' -58.4 NC_006151.1 + 127724 0.7 0.576406
Target:  5'- gCCccGGCGUCCCCGuc--GCgGGCGGg -3'
miRNA:   3'- -GGuaCCGCAGGGGCuacaCG-CCGUCg -5'
29517 3' -58.4 NC_006151.1 + 127973 0.67 0.735256
Target:  5'- ---aGGgGUCCaCGuacucGUGCGGCGGCu -3'
miRNA:   3'- gguaCCgCAGGgGCua---CACGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 128028 0.71 0.508196
Target:  5'- ---cGGCGUCUgCGAcGcccGCGGCAGCg -3'
miRNA:   3'- gguaCCGCAGGgGCUaCa--CGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 128206 0.71 0.556641
Target:  5'- uCCAUGGCG-CCCCaGgcGUGCGaCgAGCu -3'
miRNA:   3'- -GGUACCGCaGGGG-CuaCACGCcG-UCG- -5'
29517 3' -58.4 NC_006151.1 + 129328 0.66 0.833712
Target:  5'- ---aGGCGgguuagcggCCCCGGg--GCGGcCGGCg -3'
miRNA:   3'- gguaCCGCa--------GGGGCUacaCGCC-GUCG- -5'
29517 3' -58.4 NC_006151.1 + 133379 0.66 0.790977
Target:  5'- -gGUGGCGg--CCGGg--GCGGCGGCc -3'
miRNA:   3'- ggUACCGCaggGGCUacaCGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 133611 0.66 0.833712
Target:  5'- gCCGaggGGCGU-CUgGggGUcGCGGCGGCc -3'
miRNA:   3'- -GGUa--CCGCAgGGgCuaCA-CGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 133670 0.66 0.80854
Target:  5'- gCCGgcgcGGCGgcgcgcCCCCGAggcgGUcucGuCGGCGGCg -3'
miRNA:   3'- -GGUa---CCGCa-----GGGGCUa---CA---C-GCCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.