miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29517 3' -58.4 NC_006151.1 + 90602 0.69 0.656458
Target:  5'- uCCGUaGGCGUggcccccuucCCCCGAg--GCGGCccgcgGGCg -3'
miRNA:   3'- -GGUA-CCGCA----------GGGGCUacaCGCCG-----UCG- -5'
29517 3' -58.4 NC_006151.1 + 87898 0.66 0.825488
Target:  5'- gCggGGCGUcacggCCCCGcccgGCGGUAGUa -3'
miRNA:   3'- gGuaCCGCA-----GGGGCuacaCGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 86837 0.68 0.715901
Target:  5'- gCCAUGGCaG-CCCCGccGaGC-GCAGCg -3'
miRNA:   3'- -GGUACCG-CaGGGGCuaCaCGcCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 86422 0.68 0.715901
Target:  5'- ---cGGCGUCCCUGuccucGCGGCgccuGGCg -3'
miRNA:   3'- gguaCCGCAGGGGCuaca-CGCCG----UCG- -5'
29517 3' -58.4 NC_006151.1 + 84013 0.67 0.735256
Target:  5'- aCCucggGGUGcgccgCCCCGAcugcgUGUGCGuGguGCg -3'
miRNA:   3'- -GGua--CCGCa----GGGGCU-----ACACGC-CguCG- -5'
29517 3' -58.4 NC_006151.1 + 83264 0.67 0.744809
Target:  5'- gCCAgcGGCG-CCCCGAgcucaGGUAGCg -3'
miRNA:   3'- -GGUa-CCGCaGGGGCUacacgCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 82670 0.66 0.833712
Target:  5'- cCCugcGGCG-CgCCGcgGgcgaggGCGGCGGCc -3'
miRNA:   3'- -GGua-CCGCaGgGGCuaCa-----CGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 81416 0.78 0.212071
Target:  5'- -gGUGGCGUCCCCGccgagGUcGCGGCgcAGCg -3'
miRNA:   3'- ggUACCGCAGGGGCua---CA-CGCCG--UCG- -5'
29517 3' -58.4 NC_006151.1 + 81243 0.67 0.781985
Target:  5'- --cUGGCGcCCCCGcgcaggGgcaggGCGaGCAGCg -3'
miRNA:   3'- gguACCGCaGGGGCua----Ca----CGC-CGUCG- -5'
29517 3' -58.4 NC_006151.1 + 79760 0.69 0.646438
Target:  5'- cCCGcGG-GUCCCCGGUccaCGGCGGCc -3'
miRNA:   3'- -GGUaCCgCAGGGGCUAcacGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 77876 0.68 0.686375
Target:  5'- ---cGGCaUCCCCGgcGUGCGccccccgcucaGCGGCg -3'
miRNA:   3'- gguaCCGcAGGGGCuaCACGC-----------CGUCG- -5'
29517 3' -58.4 NC_006151.1 + 75334 0.73 0.408868
Target:  5'- cCCAUGGCGUgCUCGAagGUcacGUGGCAGg -3'
miRNA:   3'- -GGUACCGCAgGGGCUa-CA---CGCCGUCg -5'
29517 3' -58.4 NC_006151.1 + 73734 0.79 0.202037
Target:  5'- aCCGUGGCGUaguaguuggCCCCGAgaaaGUGgGGCAcGCa -3'
miRNA:   3'- -GGUACCGCA---------GGGGCUa---CACgCCGU-CG- -5'
29517 3' -58.4 NC_006151.1 + 71966 0.72 0.452578
Target:  5'- ---cGGCGUUgUCGcgGUGCGGCGGg -3'
miRNA:   3'- gguaCCGCAGgGGCuaCACGCCGUCg -5'
29517 3' -58.4 NC_006151.1 + 69636 0.7 0.576406
Target:  5'- ---cGGCGUCCCgCGc-GUGCGGCGccGCc -3'
miRNA:   3'- gguaCCGCAGGG-GCuaCACGCCGU--CG- -5'
29517 3' -58.4 NC_006151.1 + 69041 0.72 0.470763
Target:  5'- gCgGUGGCGUCaaagaCCGGca-GCGGCGGCu -3'
miRNA:   3'- -GgUACCGCAGg----GGCUacaCGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 68404 0.68 0.703169
Target:  5'- uCCAUGGCGcgcgcccgccccccUcgCCCCGcuacacGCGGCGGCa -3'
miRNA:   3'- -GGUACCGC--------------A--GGGGCuaca--CGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 67752 0.72 0.489312
Target:  5'- ---cGGCGgCCCCGucgggGUGCGGCGucGCg -3'
miRNA:   3'- gguaCCGCaGGGGCua---CACGCCGU--CG- -5'
29517 3' -58.4 NC_006151.1 + 66773 0.66 0.833712
Target:  5'- ---cGGcCGcCCUCGGgacgGCGGCGGCg -3'
miRNA:   3'- gguaCC-GCaGGGGCUaca-CGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 65749 0.69 0.664461
Target:  5'- gCCGggaGGCcucguccccGUCCCCGucgccgccgGCGGCGGCg -3'
miRNA:   3'- -GGUa--CCG---------CAGGGGCuaca-----CGCCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.