miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29517 3' -58.4 NC_006151.1 + 66773 0.66 0.833712
Target:  5'- ---cGGcCGcCCUCGGgacgGCGGCGGCg -3'
miRNA:   3'- gguaCC-GCaGGGGCUaca-CGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 82670 0.66 0.833712
Target:  5'- cCCugcGGCG-CgCCGcgGgcgaggGCGGCGGCc -3'
miRNA:   3'- -GGua-CCGCaGgGGCuaCa-----CGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 95273 0.66 0.833712
Target:  5'- aUCAUGGCGUUgaCGAaga-CGGCGGCg -3'
miRNA:   3'- -GGUACCGCAGggGCUacacGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 133611 0.66 0.833712
Target:  5'- gCCGaggGGCGU-CUgGggGUcGCGGCGGCc -3'
miRNA:   3'- -GGUa--CCGCAgGGgCuaCA-CGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 139659 0.66 0.833712
Target:  5'- gCGgcgGGCGcgcCgCCCGAcagGcccUGCGGCAGCg -3'
miRNA:   3'- gGUa--CCGCa--G-GGGCUa--C---ACGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 38124 0.66 0.817095
Target:  5'- cCCggGGCcggCCCgGccGaGCGGCGGCa -3'
miRNA:   3'- -GGuaCCGca-GGGgCuaCaCGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 36625 0.66 0.817095
Target:  5'- gCCGgucucGGCG--CCCGgcG-GCGGCGGCg -3'
miRNA:   3'- -GGUa----CCGCagGGGCuaCaCGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 81243 0.67 0.781985
Target:  5'- --cUGGCGcCCCCGcgcaggGgcaggGCGaGCAGCg -3'
miRNA:   3'- gguACCGCaGGGGCua----Ca----CGC-CGUCG- -5'
29517 3' -58.4 NC_006151.1 + 114395 0.67 0.781985
Target:  5'- aCGUGGUGuUCCCCGAgaaGU-CGGU-GCa -3'
miRNA:   3'- gGUACCGC-AGGGGCUa--CAcGCCGuCG- -5'
29517 3' -58.4 NC_006151.1 + 65390 0.67 0.781985
Target:  5'- cCCcgGGCGcgCCgUGAgcgaGCGGCGGUa -3'
miRNA:   3'- -GGuaCCGCa-GGgGCUaca-CGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 61447 0.66 0.790977
Target:  5'- cCCGcccGCGUCCgCCGccAUGUGCgGGCcGCg -3'
miRNA:   3'- -GGUac-CGCAGG-GGC--UACACG-CCGuCG- -5'
29517 3' -58.4 NC_006151.1 + 133379 0.66 0.790977
Target:  5'- -gGUGGCGg--CCGGg--GCGGCGGCc -3'
miRNA:   3'- ggUACCGCaggGGCUacaCGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 7514 0.66 0.799831
Target:  5'- -uGUGGUgGUCUCUGuguUGUGUGGUGGUa -3'
miRNA:   3'- ggUACCG-CAGGGGCu--ACACGCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 133670 0.66 0.80854
Target:  5'- gCCGgcgcGGCGgcgcgcCCCCGAggcgGUcucGuCGGCGGCg -3'
miRNA:   3'- -GGUa---CCGCa-----GGGGCUa---CA---C-GCCGUCG- -5'
29517 3' -58.4 NC_006151.1 + 9042 0.66 0.80854
Target:  5'- gCCggGGCG-CCCCGc-GUGCuccGGgGGCg -3'
miRNA:   3'- -GGuaCCGCaGGGGCuaCACG---CCgUCG- -5'
29517 3' -58.4 NC_006151.1 + 94272 0.66 0.80854
Target:  5'- uCCuUGGCGUCgUCGcccaGCGGCAGg -3'
miRNA:   3'- -GGuACCGCAGgGGCuacaCGCCGUCg -5'
29517 3' -58.4 NC_006151.1 + 13970 0.66 0.814545
Target:  5'- gCCAUGggggagccgggcccGCGUCCCCGGggcccacgUGUGaGGCcccGGCc -3'
miRNA:   3'- -GGUAC--------------CGCAGGGGCU--------ACACgCCG---UCG- -5'
29517 3' -58.4 NC_006151.1 + 10642 0.66 0.817095
Target:  5'- gCCGgcgcGGCaUCCCCGcccagGCGGCGGg -3'
miRNA:   3'- -GGUa---CCGcAGGGGCuaca-CGCCGUCg -5'
29517 3' -58.4 NC_006151.1 + 122454 0.66 0.817095
Target:  5'- ---cGGCGUCCaCGgcG-GCGGCGGg -3'
miRNA:   3'- gguaCCGCAGGgGCuaCaCGCCGUCg -5'
29517 3' -58.4 NC_006151.1 + 123610 0.66 0.817095
Target:  5'- gCC-UGGCGauauaUCCgCGAgcugGUGCuGGCGGUu -3'
miRNA:   3'- -GGuACCGC-----AGGgGCUa---CACG-CCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.