Results 81 - 100 of 104 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29517 | 3' | -58.4 | NC_006151.1 | + | 83264 | 0.67 | 0.744809 |
Target: 5'- gCCAgcGGCG-CCCCGAgcucaGGUAGCg -3' miRNA: 3'- -GGUa-CCGCaGGGGCUacacgCCGUCG- -5' |
|||||||
29517 | 3' | -58.4 | NC_006151.1 | + | 118923 | 0.67 | 0.735256 |
Target: 5'- gCAUGGCGUCCgucaugagcgCCGAc--GCGGC-GCu -3' miRNA: 3'- gGUACCGCAGG----------GGCUacaCGCCGuCG- -5' |
|||||||
29517 | 3' | -58.4 | NC_006151.1 | + | 109258 | 0.67 | 0.735256 |
Target: 5'- uCCGcUGGCGgCCCCGAcGUcGCuGGCcGCc -3' miRNA: 3'- -GGU-ACCGCaGGGGCUaCA-CG-CCGuCG- -5' |
|||||||
29517 | 3' | -58.4 | NC_006151.1 | + | 54285 | 0.67 | 0.735256 |
Target: 5'- aCUcgGuGCGcUCCaCCGAggccgccGUGCGGCAGa -3' miRNA: 3'- -GGuaC-CGC-AGG-GGCUa------CACGCCGUCg -5' |
|||||||
29517 | 3' | -58.4 | NC_006151.1 | + | 4500 | 0.67 | 0.735256 |
Target: 5'- gCCAcGGCGcUCaCCGc-GUGCGGCAGg -3' miRNA: 3'- -GGUaCCGC-AGgGGCuaCACGCCGUCg -5' |
|||||||
29517 | 3' | -58.4 | NC_006151.1 | + | 127973 | 0.67 | 0.735256 |
Target: 5'- ---aGGgGUCCaCGuacucGUGCGGCGGCu -3' miRNA: 3'- gguaCCgCAGGgGCua---CACGCCGUCG- -5' |
|||||||
29517 | 3' | -58.4 | NC_006151.1 | + | 103822 | 0.67 | 0.735256 |
Target: 5'- gCCGUGGCGgcggCCguggaGAUGcucggGCGGCuGCg -3' miRNA: 3'- -GGUACCGCa---GGgg---CUACa----CGCCGuCG- -5' |
|||||||
29517 | 3' | -58.4 | NC_006151.1 | + | 48109 | 0.67 | 0.754267 |
Target: 5'- cUCGUGGCGgUgCUGGUGUuuuuuuCGGCGGCg -3' miRNA: 3'- -GGUACCGCaGgGGCUACAc-----GCCGUCG- -5' |
|||||||
29517 | 3' | -58.4 | NC_006151.1 | + | 96702 | 0.67 | 0.754267 |
Target: 5'- ----uGCGUCCgcgCCGggG-GCGGCGGCg -3' miRNA: 3'- gguacCGCAGG---GGCuaCaCGCCGUCG- -5' |
|||||||
29517 | 3' | -58.4 | NC_006151.1 | + | 17372 | 0.67 | 0.762691 |
Target: 5'- gCCGUGGgGUCggaccgugUCCGcacgacggggcgcGUGgcgcGCGGCAGCa -3' miRNA: 3'- -GGUACCgCAG--------GGGC-------------UACa---CGCCGUCG- -5' |
|||||||
29517 | 3' | -58.4 | NC_006151.1 | + | 65390 | 0.67 | 0.781985 |
Target: 5'- cCCcgGGCGcgCCgUGAgcgaGCGGCGGUa -3' miRNA: 3'- -GGuaCCGCa-GGgGCUaca-CGCCGUCG- -5' |
|||||||
29517 | 3' | -58.4 | NC_006151.1 | + | 114395 | 0.67 | 0.781985 |
Target: 5'- aCGUGGUGuUCCCCGAgaaGU-CGGU-GCa -3' miRNA: 3'- gGUACCGC-AGGGGCUa--CAcGCCGuCG- -5' |
|||||||
29517 | 3' | -58.4 | NC_006151.1 | + | 81243 | 0.67 | 0.781985 |
Target: 5'- --cUGGCGcCCCCGcgcaggGgcaggGCGaGCAGCg -3' miRNA: 3'- gguACCGCaGGGGCua----Ca----CGC-CGUCG- -5' |
|||||||
29517 | 3' | -58.4 | NC_006151.1 | + | 51976 | 0.67 | 0.781985 |
Target: 5'- uCCAgcgaGGCGagcagCUCCGcgGUGCcGGCGuGCa -3' miRNA: 3'- -GGUa---CCGCa----GGGGCuaCACG-CCGU-CG- -5' |
|||||||
29517 | 3' | -58.4 | NC_006151.1 | + | 104790 | 0.67 | 0.772863 |
Target: 5'- gCCAUGcGCGcgcucgugcgCCgCGAccUG-GCGGCGGCg -3' miRNA: 3'- -GGUAC-CGCa---------GGgGCU--ACaCGCCGUCG- -5' |
|||||||
29517 | 3' | -58.4 | NC_006151.1 | + | 106776 | 0.67 | 0.772863 |
Target: 5'- gCGUGaGCG-CCUgGAccUGgccGCGGCGGCg -3' miRNA: 3'- gGUAC-CGCaGGGgCU--ACa--CGCCGUCG- -5' |
|||||||
29517 | 3' | -58.4 | NC_006151.1 | + | 41051 | 0.67 | 0.772863 |
Target: 5'- ---gGGgGUCCuuGAUGgugGUGGUGGUg -3' miRNA: 3'- gguaCCgCAGGggCUACa--CGCCGUCG- -5' |
|||||||
29517 | 3' | -58.4 | NC_006151.1 | + | 2689 | 0.67 | 0.763621 |
Target: 5'- ---cGGCucggCCCCGggGUGCaGGCGGg -3' miRNA: 3'- gguaCCGca--GGGGCuaCACG-CCGUCg -5' |
|||||||
29517 | 3' | -58.4 | NC_006151.1 | + | 119357 | 0.67 | 0.763621 |
Target: 5'- gCCAUGGaccaCCUGGUGaugGCGuGCGGCu -3' miRNA: 3'- -GGUACCgcagGGGCUACa--CGC-CGUCG- -5' |
|||||||
29517 | 3' | -58.4 | NC_006151.1 | + | 19938 | 0.67 | 0.763621 |
Target: 5'- gCAUGGUcucaaCCCCGGUGUGUcgagacucgcggGGguGCc -3' miRNA: 3'- gGUACCGca---GGGGCUACACG------------CCguCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home