Results 41 - 60 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29517 | 3' | -58.4 | NC_006151.1 | + | 66773 | 0.66 | 0.833712 |
Target: 5'- ---cGGcCGcCCUCGGgacgGCGGCGGCg -3' miRNA: 3'- gguaCC-GCaGGGGCUaca-CGCCGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 82670 | 0.66 | 0.833712 |
Target: 5'- cCCugcGGCG-CgCCGcgGgcgaggGCGGCGGCc -3' miRNA: 3'- -GGua-CCGCaGgGGCuaCa-----CGCCGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 95273 | 0.66 | 0.833712 |
Target: 5'- aUCAUGGCGUUgaCGAaga-CGGCGGCg -3' miRNA: 3'- -GGUACCGCAGggGCUacacGCCGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 133611 | 0.66 | 0.833712 |
Target: 5'- gCCGaggGGCGU-CUgGggGUcGCGGCGGCc -3' miRNA: 3'- -GGUa--CCGCAgGGgCuaCA-CGCCGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 139659 | 0.66 | 0.833712 |
Target: 5'- gCGgcgGGCGcgcCgCCCGAcagGcccUGCGGCAGCg -3' miRNA: 3'- gGUa--CCGCa--G-GGGCUa--C---ACGCCGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 38124 | 0.66 | 0.817095 |
Target: 5'- cCCggGGCcggCCCgGccGaGCGGCGGCa -3' miRNA: 3'- -GGuaCCGca-GGGgCuaCaCGCCGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 36625 | 0.66 | 0.817095 |
Target: 5'- gCCGgucucGGCG--CCCGgcG-GCGGCGGCg -3' miRNA: 3'- -GGUa----CCGCagGGGCuaCaCGCCGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 81243 | 0.67 | 0.781985 |
Target: 5'- --cUGGCGcCCCCGcgcaggGgcaggGCGaGCAGCg -3' miRNA: 3'- gguACCGCaGGGGCua----Ca----CGC-CGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 114395 | 0.67 | 0.781985 |
Target: 5'- aCGUGGUGuUCCCCGAgaaGU-CGGU-GCa -3' miRNA: 3'- gGUACCGC-AGGGGCUa--CAcGCCGuCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 65390 | 0.67 | 0.781985 |
Target: 5'- cCCcgGGCGcgCCgUGAgcgaGCGGCGGUa -3' miRNA: 3'- -GGuaCCGCa-GGgGCUaca-CGCCGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 61447 | 0.66 | 0.790977 |
Target: 5'- cCCGcccGCGUCCgCCGccAUGUGCgGGCcGCg -3' miRNA: 3'- -GGUac-CGCAGG-GGC--UACACG-CCGuCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 133379 | 0.66 | 0.790977 |
Target: 5'- -gGUGGCGg--CCGGg--GCGGCGGCc -3' miRNA: 3'- ggUACCGCaggGGCUacaCGCCGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 7514 | 0.66 | 0.799831 |
Target: 5'- -uGUGGUgGUCUCUGuguUGUGUGGUGGUa -3' miRNA: 3'- ggUACCG-CAGGGGCu--ACACGCCGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 133670 | 0.66 | 0.80854 |
Target: 5'- gCCGgcgcGGCGgcgcgcCCCCGAggcgGUcucGuCGGCGGCg -3' miRNA: 3'- -GGUa---CCGCa-----GGGGCUa---CA---C-GCCGUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 9042 | 0.66 | 0.80854 |
Target: 5'- gCCggGGCG-CCCCGc-GUGCuccGGgGGCg -3' miRNA: 3'- -GGuaCCGCaGGGGCuaCACG---CCgUCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 94272 | 0.66 | 0.80854 |
Target: 5'- uCCuUGGCGUCgUCGcccaGCGGCAGg -3' miRNA: 3'- -GGuACCGCAGgGGCuacaCGCCGUCg -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 13970 | 0.66 | 0.814545 |
Target: 5'- gCCAUGggggagccgggcccGCGUCCCCGGggcccacgUGUGaGGCcccGGCc -3' miRNA: 3'- -GGUAC--------------CGCAGGGGCU--------ACACgCCG---UCG- -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 10642 | 0.66 | 0.817095 |
Target: 5'- gCCGgcgcGGCaUCCCCGcccagGCGGCGGg -3' miRNA: 3'- -GGUa---CCGcAGGGGCuaca-CGCCGUCg -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 122454 | 0.66 | 0.817095 |
Target: 5'- ---cGGCGUCCaCGgcG-GCGGCGGg -3' miRNA: 3'- gguaCCGCAGGgGCuaCaCGCCGUCg -5' |
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29517 | 3' | -58.4 | NC_006151.1 | + | 123610 | 0.66 | 0.817095 |
Target: 5'- gCC-UGGCGauauaUCCgCGAgcugGUGCuGGCGGUu -3' miRNA: 3'- -GGuACCGC-----AGGgGCUa---CACG-CCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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