miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29518 3' -58.7 NC_006151.1 + 45701 0.67 0.681988
Target:  5'- aCCAugggcugcacggucUCUCGGAgacggacGACCACCGCCGAGGc -3'
miRNA:   3'- aGGU--------------GGGGUCU-------CUGGUGGCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 136858 0.67 0.675926
Target:  5'- cUCgCGCgCCGcGuGACCGCCGUCGAGGa -3'
miRNA:   3'- -AG-GUGgGGU-CuCUGGUGGCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 84009 0.67 0.675926
Target:  5'- gUCaACCUCGGGGugCGCCGCCccGAc -3'
miRNA:   3'- -AGgUGGGGUCUCugGUGGCGGuuCUa -5'
29518 3' -58.7 NC_006151.1 + 48794 0.67 0.67289
Target:  5'- cCCgACCCCGGGGcgcccacgugggacGCCuucGCCGCCGAGu- -3'
miRNA:   3'- aGG-UGGGGUCUC--------------UGG---UGGCGGUUCua -5'
29518 3' -58.7 NC_006151.1 + 83413 0.67 0.706071
Target:  5'- gCCACCaCCAGG--UUGCCGCCGGGGg -3'
miRNA:   3'- aGGUGG-GGUCUcuGGUGGCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 109283 0.67 0.706071
Target:  5'- gCCGCCCCcuccGAGAucgagcggcCCGCCGCCucGGc -3'
miRNA:   3'- aGGUGGGGu---CUCU---------GGUGGCGGuuCUa -5'
29518 3' -58.7 NC_006151.1 + 38261 0.67 0.725872
Target:  5'- cUUCGCCCCGGccaacguGGCCGCggcccggcuCGCCGAGGc -3'
miRNA:   3'- -AGGUGGGGUCu------CUGGUG---------GCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 134716 0.67 0.725872
Target:  5'- aCCGCCCCGcGuGGCCuuCGCgCGGGAc -3'
miRNA:   3'- aGGUGGGGU-CuCUGGugGCG-GUUCUa -5'
29518 3' -58.7 NC_006151.1 + 87190 0.67 0.725872
Target:  5'- gCCGCCgCAGcuGCUGCCGCCcGGGg -3'
miRNA:   3'- aGGUGGgGUCucUGGUGGCGGuUCUa -5'
29518 3' -58.7 NC_006151.1 + 39094 0.67 0.725872
Target:  5'- gCUGCCCCAcGAGgagcucugcGCCGagcCCGCCGAGGg -3'
miRNA:   3'- aGGUGGGGU-CUC---------UGGU---GGCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 36071 0.67 0.722921
Target:  5'- uUCgGCCCgGGcGGCCucuucuccgacgacGCCGCCGAGGc -3'
miRNA:   3'- -AGgUGGGgUCuCUGG--------------UGGCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 82402 0.67 0.716007
Target:  5'- cUCCGCgCCCGaGGGCgGCC-CCGAGAg -3'
miRNA:   3'- -AGGUG-GGGUcUCUGgUGGcGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 23513 0.67 0.716007
Target:  5'- cUCCACCgaCAGGGAgaCGgUGCCGAGGUa -3'
miRNA:   3'- -AGGUGGg-GUCUCUg-GUgGCGGUUCUA- -5'
29518 3' -58.7 NC_006151.1 + 107569 0.67 0.716007
Target:  5'- gCCaaGCCCgCGGAGcugacucCCGCCGCCAAGc- -3'
miRNA:   3'- aGG--UGGG-GUCUCu------GGUGGCGGUUCua -5'
29518 3' -58.7 NC_006151.1 + 22132 0.67 0.716007
Target:  5'- gUCCACCUgcggguCGGAGAUCAgCGCCAc--- -3'
miRNA:   3'- -AGGUGGG------GUCUCUGGUgGCGGUucua -5'
29518 3' -58.7 NC_006151.1 + 35900 0.67 0.706071
Target:  5'- --gACCCCGaucGAGACCAUgGCCGAcGAUc -3'
miRNA:   3'- aggUGGGGU---CUCUGGUGgCGGUU-CUA- -5'
29518 3' -58.7 NC_006151.1 + 32238 0.67 0.706071
Target:  5'- cUCCugGCCgCGGcGACCGCCGCCGc--- -3'
miRNA:   3'- -AGG--UGGgGUCuCUGGUGGCGGUucua -5'
29518 3' -58.7 NC_006151.1 + 54140 0.68 0.665795
Target:  5'- cUCUGCCCCGGcGG-CGCCGCgGAGGa -3'
miRNA:   3'- -AGGUGGGGUCuCUgGUGGCGgUUCUa -5'
29518 3' -58.7 NC_006151.1 + 101850 0.68 0.659703
Target:  5'- cCCGCCCCGGcacccGGcggcgcaccgcucccGCCGCCGCCGcGGGUc -3'
miRNA:   3'- aGGUGGGGUC-----UC---------------UGGUGGCGGU-UCUA- -5'
29518 3' -58.7 NC_006151.1 + 89937 0.68 0.655637
Target:  5'- -gCGCCCCAGGuccgcGGgCGCgGCCAGGAa -3'
miRNA:   3'- agGUGGGGUCU-----CUgGUGgCGGUUCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.