miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29518 3' -58.7 NC_006151.1 + 37243 0.68 0.625084
Target:  5'- cCgGCCCCGGAGcccgcccgGCCcCCGCgCAGGAa -3'
miRNA:   3'- aGgUGGGGUCUC--------UGGuGGCG-GUUCUa -5'
29518 3' -58.7 NC_006151.1 + 87063 0.68 0.625084
Target:  5'- aCUACCCCGGGGAggCGCCGCCc---- -3'
miRNA:   3'- aGGUGGGGUCUCUg-GUGGCGGuucua -5'
29518 3' -58.7 NC_006151.1 + 82331 0.68 0.625084
Target:  5'- gCCACCuCCGcGGGccacACCGCCGCCGuGGUg -3'
miRNA:   3'- aGGUGG-GGU-CUC----UGGUGGCGGUuCUA- -5'
29518 3' -58.7 NC_006151.1 + 48333 0.68 0.625084
Target:  5'- gCUGCCgCCGGAcauGACCGCCGUCAcGAg -3'
miRNA:   3'- aGGUGG-GGUCU---CUGGUGGCGGUuCUa -5'
29518 3' -58.7 NC_006151.1 + 102903 0.68 0.635274
Target:  5'- gCCGCCUCGucGACUcgcuggcgGCCGCCGAGGa -3'
miRNA:   3'- aGGUGGGGUcuCUGG--------UGGCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 107874 0.68 0.635274
Target:  5'- gCCcCCCCGGAGGCC-CC-CCAGGc- -3'
miRNA:   3'- aGGuGGGGUCUCUGGuGGcGGUUCua -5'
29518 3' -58.7 NC_006151.1 + 88275 0.68 0.635274
Target:  5'- -gCGCaCC-GAGACCGCCGCCGGGu- -3'
miRNA:   3'- agGUGgGGuCUCUGGUGGCGGUUCua -5'
29518 3' -58.7 NC_006151.1 + 133008 0.68 0.645461
Target:  5'- uUCCGCCCgGGGGugCucUCGuCCAGGAc -3'
miRNA:   3'- -AGGUGGGgUCUCugGu-GGC-GGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 108703 0.68 0.645461
Target:  5'- cUCCuggagcCCCCGGGagugguGGCCAgCGCCGAGGa -3'
miRNA:   3'- -AGGu-----GGGGUCU------CUGGUgGCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 21892 0.68 0.65462
Target:  5'- aCCGCCCCGGAG-CCACCaugagcaGCCc---- -3'
miRNA:   3'- aGGUGGGGUCUCuGGUGG-------CGGuucua -5'
29518 3' -58.7 NC_006151.1 + 89937 0.68 0.655637
Target:  5'- -gCGCCCCAGGuccgcGGgCGCgGCCAGGAa -3'
miRNA:   3'- agGUGGGGUCU-----CUgGUGgCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 1836 0.68 0.655637
Target:  5'- gCCGCCgggCCGaggggaccGAGGCCGCCGCCGcGGAc -3'
miRNA:   3'- aGGUGG---GGU--------CUCUGGUGGCGGU-UCUa -5'
29518 3' -58.7 NC_006151.1 + 61847 0.68 0.655637
Target:  5'- gCCGCCCCGGGGACCcugauGCucggcgcgucugCGCCuGGAc -3'
miRNA:   3'- aGGUGGGGUCUCUGG-----UG------------GCGGuUCUa -5'
29518 3' -58.7 NC_006151.1 + 101850 0.68 0.659703
Target:  5'- cCCGCCCCGGcacccGGcggcgcaccgcucccGCCGCCGCCGcGGGUc -3'
miRNA:   3'- aGGUGGGGUC-----UC---------------UGGUGGCGGU-UCUA- -5'
29518 3' -58.7 NC_006151.1 + 5779 0.68 0.665795
Target:  5'- gUCC-CCCCucgcgGGGGACCaucuccgcgggGCUGCCGAGGg -3'
miRNA:   3'- -AGGuGGGG-----UCUCUGG-----------UGGCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 54140 0.68 0.665795
Target:  5'- cUCUGCCCCGGcGG-CGCCGCgGAGGa -3'
miRNA:   3'- -AGGUGGGGUCuCUgGUGGCGgUUCUa -5'
29518 3' -58.7 NC_006151.1 + 48794 0.67 0.67289
Target:  5'- cCCgACCCCGGGGcgcccacgugggacGCCuucGCCGCCGAGu- -3'
miRNA:   3'- aGG-UGGGGUCUC--------------UGG---UGGCGGUUCua -5'
29518 3' -58.7 NC_006151.1 + 136858 0.67 0.675926
Target:  5'- cUCgCGCgCCGcGuGACCGCCGUCGAGGa -3'
miRNA:   3'- -AG-GUGgGGU-CuCUGGUGGCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 84009 0.67 0.675926
Target:  5'- gUCaACCUCGGGGugCGCCGCCccGAc -3'
miRNA:   3'- -AGgUGGGGUCUCugGUGGCGGuuCUa -5'
29518 3' -58.7 NC_006151.1 + 45701 0.67 0.681988
Target:  5'- aCCAugggcugcacggucUCUCGGAgacggacGACCACCGCCGAGGc -3'
miRNA:   3'- aGGU--------------GGGGUCU-------CUGGUGGCGGUUCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.