Results 61 - 80 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29518 | 3' | -58.7 | NC_006151.1 | + | 70701 | 0.67 | 0.686021 |
Target: 5'- aCCGCCCCuccucGGuGGCCaACCGCCGc--- -3' miRNA: 3'- aGGUGGGG-----UCuCUGG-UGGCGGUucua -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 140194 | 0.67 | 0.686021 |
Target: 5'- --gACCCCAucGuGGCCACCGCgGGGGc -3' miRNA: 3'- aggUGGGGU--CuCUGGUGGCGgUUCUa -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 51332 | 0.67 | 0.686021 |
Target: 5'- aCCGCUCCGGcuccccGuCCACgGCCAGGAc -3' miRNA: 3'- aGGUGGGGUCu-----CuGGUGgCGGUUCUa -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 17069 | 0.67 | 0.686021 |
Target: 5'- gUCAgCCC--GGGCCGCCGCCGGGu- -3' miRNA: 3'- aGGUgGGGucUCUGGUGGCGGUUCua -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 129207 | 0.67 | 0.696072 |
Target: 5'- aCCuCCCCGGGGGCCGCCaGCa----- -3' miRNA: 3'- aGGuGGGGUCUCUGGUGG-CGguucua -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 79052 | 0.67 | 0.696072 |
Target: 5'- aUCCGCCCCGaagcccGAGAacccaacccCCACCGCCc---- -3' miRNA: 3'- -AGGUGGGGU------CUCU---------GGUGGCGGuucua -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 107978 | 0.67 | 0.700079 |
Target: 5'- cCCugCCCAGaAGcccccggcgcagcccGCCACCGCCGc--- -3' miRNA: 3'- aGGugGGGUC-UC---------------UGGUGGCGGUucua -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 32238 | 0.67 | 0.706071 |
Target: 5'- cUCCugGCCgCGGcGACCGCCGCCGc--- -3' miRNA: 3'- -AGG--UGGgGUCuCUGGUGGCGGUucua -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 83413 | 0.67 | 0.706071 |
Target: 5'- gCCACCaCCAGG--UUGCCGCCGGGGg -3' miRNA: 3'- aGGUGG-GGUCUcuGGUGGCGGUUCUa -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 109283 | 0.67 | 0.706071 |
Target: 5'- gCCGCCCCcuccGAGAucgagcggcCCGCCGCCucGGc -3' miRNA: 3'- aGGUGGGGu---CUCU---------GGUGGCGGuuCUa -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 35900 | 0.67 | 0.706071 |
Target: 5'- --gACCCCGaucGAGACCAUgGCCGAcGAUc -3' miRNA: 3'- aggUGGGGU---CUCUGGUGgCGGUU-CUA- -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 22132 | 0.67 | 0.716007 |
Target: 5'- gUCCACCUgcggguCGGAGAUCAgCGCCAc--- -3' miRNA: 3'- -AGGUGGG------GUCUCUGGUgGCGGUucua -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 107569 | 0.67 | 0.716007 |
Target: 5'- gCCaaGCCCgCGGAGcugacucCCGCCGCCAAGc- -3' miRNA: 3'- aGG--UGGG-GUCUCu------GGUGGCGGUUCua -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 23513 | 0.67 | 0.716007 |
Target: 5'- cUCCACCgaCAGGGAgaCGgUGCCGAGGUa -3' miRNA: 3'- -AGGUGGg-GUCUCUg-GUgGCGGUUCUA- -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 82402 | 0.67 | 0.716007 |
Target: 5'- cUCCGCgCCCGaGGGCgGCC-CCGAGAg -3' miRNA: 3'- -AGGUG-GGGUcUCUGgUGGcGGUUCUa -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 36071 | 0.67 | 0.722921 |
Target: 5'- uUCgGCCCgGGcGGCCucuucuccgacgacGCCGCCGAGGc -3' miRNA: 3'- -AGgUGGGgUCuCUGG--------------UGGCGGUUCUa -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 39094 | 0.67 | 0.725872 |
Target: 5'- gCUGCCCCAcGAGgagcucugcGCCGagcCCGCCGAGGg -3' miRNA: 3'- aGGUGGGGU-CUC---------UGGU---GGCGGUUCUa -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 87190 | 0.67 | 0.725872 |
Target: 5'- gCCGCCgCAGcuGCUGCCGCCcGGGg -3' miRNA: 3'- aGGUGGgGUCucUGGUGGCGGuUCUa -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 134716 | 0.67 | 0.725872 |
Target: 5'- aCCGCCCCGcGuGGCCuuCGCgCGGGAc -3' miRNA: 3'- aGGUGGGGU-CuCUGGugGCG-GUUCUa -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 38261 | 0.67 | 0.725872 |
Target: 5'- cUUCGCCCCGGccaacguGGCCGCggcccggcuCGCCGAGGc -3' miRNA: 3'- -AGGUGGGGUCu------CUGGUG---------GCGGUUCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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