Results 41 - 60 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29518 | 3' | -58.7 | NC_006151.1 | + | 23513 | 0.67 | 0.716007 |
Target: 5'- cUCCACCgaCAGGGAgaCGgUGCCGAGGUa -3' miRNA: 3'- -AGGUGGg-GUCUCUg-GUgGCGGUUCUA- -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 82402 | 0.67 | 0.716007 |
Target: 5'- cUCCGCgCCCGaGGGCgGCC-CCGAGAg -3' miRNA: 3'- -AGGUG-GGGUcUCUGgUGGcGGUUCUa -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 35900 | 0.67 | 0.706071 |
Target: 5'- --gACCCCGaucGAGACCAUgGCCGAcGAUc -3' miRNA: 3'- aggUGGGGU---CUCUGGUGgCGGUU-CUA- -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 32238 | 0.67 | 0.706071 |
Target: 5'- cUCCugGCCgCGGcGACCGCCGCCGc--- -3' miRNA: 3'- -AGG--UGGgGUCuCUGGUGGCGGUucua -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 109283 | 0.67 | 0.706071 |
Target: 5'- gCCGCCCCcuccGAGAucgagcggcCCGCCGCCucGGc -3' miRNA: 3'- aGGUGGGGu---CUCU---------GGUGGCGGuuCUa -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 83413 | 0.67 | 0.706071 |
Target: 5'- gCCACCaCCAGG--UUGCCGCCGGGGg -3' miRNA: 3'- aGGUGG-GGUCUcuGGUGGCGGUUCUa -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 107978 | 0.67 | 0.700079 |
Target: 5'- cCCugCCCAGaAGcccccggcgcagcccGCCACCGCCGc--- -3' miRNA: 3'- aGGugGGGUC-UC---------------UGGUGGCGGUucua -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 79052 | 0.67 | 0.696072 |
Target: 5'- aUCCGCCCCGaagcccGAGAacccaacccCCACCGCCc---- -3' miRNA: 3'- -AGGUGGGGU------CUCU---------GGUGGCGGuucua -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 129207 | 0.67 | 0.696072 |
Target: 5'- aCCuCCCCGGGGGCCGCCaGCa----- -3' miRNA: 3'- aGGuGGGGUCUCUGGUGG-CGguucua -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 70701 | 0.67 | 0.686021 |
Target: 5'- aCCGCCCCuccucGGuGGCCaACCGCCGc--- -3' miRNA: 3'- aGGUGGGG-----UCuCUGG-UGGCGGUucua -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 17069 | 0.67 | 0.686021 |
Target: 5'- gUCAgCCC--GGGCCGCCGCCGGGu- -3' miRNA: 3'- aGGUgGGGucUCUGGUGGCGGUUCua -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 140194 | 0.67 | 0.686021 |
Target: 5'- --gACCCCAucGuGGCCACCGCgGGGGc -3' miRNA: 3'- aggUGGGGU--CuCUGGUGGCGgUUCUa -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 51332 | 0.67 | 0.686021 |
Target: 5'- aCCGCUCCGGcuccccGuCCACgGCCAGGAc -3' miRNA: 3'- aGGUGGGGUCu-----CuGGUGgCGGUUCUa -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 45701 | 0.67 | 0.681988 |
Target: 5'- aCCAugggcugcacggucUCUCGGAgacggacGACCACCGCCGAGGc -3' miRNA: 3'- aGGU--------------GGGGUCU-------CUGGUGGCGGUUCUa -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 84009 | 0.67 | 0.675926 |
Target: 5'- gUCaACCUCGGGGugCGCCGCCccGAc -3' miRNA: 3'- -AGgUGGGGUCUCugGUGGCGGuuCUa -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 136858 | 0.67 | 0.675926 |
Target: 5'- cUCgCGCgCCGcGuGACCGCCGUCGAGGa -3' miRNA: 3'- -AG-GUGgGGU-CuCUGGUGGCGGUUCUa -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 48794 | 0.67 | 0.67289 |
Target: 5'- cCCgACCCCGGGGcgcccacgugggacGCCuucGCCGCCGAGu- -3' miRNA: 3'- aGG-UGGGGUCUC--------------UGG---UGGCGGUUCua -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 5779 | 0.68 | 0.665795 |
Target: 5'- gUCC-CCCCucgcgGGGGACCaucuccgcgggGCUGCCGAGGg -3' miRNA: 3'- -AGGuGGGG-----UCUCUGG-----------UGGCGGUUCUa -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 54140 | 0.68 | 0.665795 |
Target: 5'- cUCUGCCCCGGcGG-CGCCGCgGAGGa -3' miRNA: 3'- -AGGUGGGGUCuCUgGUGGCGgUUCUa -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 101850 | 0.68 | 0.659703 |
Target: 5'- cCCGCCCCGGcacccGGcggcgcaccgcucccGCCGCCGCCGcGGGUc -3' miRNA: 3'- aGGUGGGGUC-----UC---------------UGGUGGCGGU-UCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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