miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29518 3' -58.7 NC_006151.1 + 91906 0.69 0.584454
Target:  5'- gCCACCgucuggugcgcUCGGAGGCCaucuccacGCCGCCGGGGg -3'
miRNA:   3'- aGGUGG-----------GGUCUCUGG--------UGGCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 79615 0.69 0.574364
Target:  5'- gCCACaaCCCGGAGcGCCGCCGUCGccgcuGGAUc -3'
miRNA:   3'- aGGUG--GGGUCUC-UGGUGGCGGU-----UCUA- -5'
29518 3' -58.7 NC_006151.1 + 40039 0.69 0.564315
Target:  5'- gCCGCCgCCGGGGG-CGCCGUgGAGAc -3'
miRNA:   3'- aGGUGG-GGUCUCUgGUGGCGgUUCUa -5'
29518 3' -58.7 NC_006151.1 + 37880 0.7 0.554314
Target:  5'- cCCGCgCCggGGAGGCgACCGUCGAGGc -3'
miRNA:   3'- aGGUGgGG--UCUCUGgUGGCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 108036 0.7 0.554314
Target:  5'- gCCACCCCccAGACUcaGCCGCCGAc-- -3'
miRNA:   3'- aGGUGGGGucUCUGG--UGGCGGUUcua -5'
29518 3' -58.7 NC_006151.1 + 87497 0.7 0.544365
Target:  5'- gCCGCCCCcGuucAGGCCGCCGCCc---- -3'
miRNA:   3'- aGGUGGGGuC---UCUGGUGGCGGuucua -5'
29518 3' -58.7 NC_006151.1 + 37005 0.7 0.544365
Target:  5'- cUCCGCCCCccGGGcccccGCCGCCGCCGc--- -3'
miRNA:   3'- -AGGUGGGGu-CUC-----UGGUGGCGGUucua -5'
29518 3' -58.7 NC_006151.1 + 38575 0.7 0.544365
Target:  5'- gCCGCgcgCCCGGGGcCCGCCGCCccgGGGAc -3'
miRNA:   3'- aGGUG---GGGUCUCuGGUGGCGG---UUCUa -5'
29518 3' -58.7 NC_006151.1 + 46157 0.7 0.544365
Target:  5'- cCCGCCCCAGAGuCC-CCGUCu---- -3'
miRNA:   3'- aGGUGGGGUCUCuGGuGGCGGuucua -5'
29518 3' -58.7 NC_006151.1 + 46539 0.7 0.534474
Target:  5'- gUCCGCggacgaCCAGAGGCCGgCGCCcAGGc -3'
miRNA:   3'- -AGGUGg-----GGUCUCUGGUgGCGGuUCUa -5'
29518 3' -58.7 NC_006151.1 + 8973 0.7 0.521714
Target:  5'- -gCGCCCCGGGaagggucgggcgauGGCCGCCGCCAc--- -3'
miRNA:   3'- agGUGGGGUCU--------------CUGGUGGCGGUucua -5'
29518 3' -58.7 NC_006151.1 + 86962 0.7 0.50521
Target:  5'- cUCgGCCgCCAuGGACCGCCGCCAc--- -3'
miRNA:   3'- -AGgUGG-GGUcUCUGGUGGCGGUucua -5'
29518 3' -58.7 NC_006151.1 + 114122 0.71 0.495607
Target:  5'- gCUGCCCCAcGuGcGCCGCCGCCGAGc- -3'
miRNA:   3'- aGGUGGGGU-CuC-UGGUGGCGGUUCua -5'
29518 3' -58.7 NC_006151.1 + 7909 0.71 0.486087
Target:  5'- cCCACCCCAcGAGACaCGCC-CCA-GAg -3'
miRNA:   3'- aGGUGGGGU-CUCUG-GUGGcGGUuCUa -5'
29518 3' -58.7 NC_006151.1 + 1077 0.71 0.476656
Target:  5'- cCCACCCCccucGACCACCG-CAGGAc -3'
miRNA:   3'- aGGUGGGGucu-CUGGUGGCgGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 79687 0.71 0.467316
Target:  5'- gCCGCCgCGGGGACCGCaGCCGAa-- -3'
miRNA:   3'- aGGUGGgGUCUCUGGUGgCGGUUcua -5'
29518 3' -58.7 NC_006151.1 + 6288 0.71 0.467316
Target:  5'- cUCgGCCgCGGcGGCgGCCGCCAGGAg -3'
miRNA:   3'- -AGgUGGgGUCuCUGgUGGCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 13670 0.71 0.458071
Target:  5'- cCCGCCuCCGGGGACgCGCCgGCCAAu-- -3'
miRNA:   3'- aGGUGG-GGUCUCUG-GUGG-CGGUUcua -5'
29518 3' -58.7 NC_006151.1 + 50781 0.71 0.455317
Target:  5'- gCCGCCCCGacgccccagcugccGAGACC-CCGCCAGc-- -3'
miRNA:   3'- aGGUGGGGU--------------CUCUGGuGGCGGUUcua -5'
29518 3' -58.7 NC_006151.1 + 13389 0.72 0.430941
Target:  5'- cCCGCCuCCGGGGACgCGCCgGCCAauGGGg -3'
miRNA:   3'- aGGUGG-GGUCUCUG-GUGG-CGGU--UCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.