Results 61 - 80 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29518 | 3' | -58.7 | NC_006151.1 | + | 79615 | 0.69 | 0.574364 |
Target: 5'- gCCACaaCCCGGAGcGCCGCCGUCGccgcuGGAUc -3' miRNA: 3'- aGGUG--GGGUCUC-UGGUGGCGGU-----UCUA- -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 79687 | 0.71 | 0.467316 |
Target: 5'- gCCGCCgCGGGGACCGCaGCCGAa-- -3' miRNA: 3'- aGGUGGgGUCUCUGGUGgCGGUUcua -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 80803 | 0.76 | 0.239949 |
Target: 5'- gCCGCCCCcacgacGGAGGCCACCacguagGCCGGGAc -3' miRNA: 3'- aGGUGGGG------UCUCUGGUGG------CGGUUCUa -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 81329 | 0.66 | 0.754951 |
Target: 5'- cUCCGCCCCcucguccGucGCCGCCGCCGcgcccGGGg -3' miRNA: 3'- -AGGUGGGGu------CucUGGUGGCGGU-----UCUa -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 81393 | 0.66 | 0.764441 |
Target: 5'- gCCGCggcgCCCAGGuuGGCCAggguggcguccCCGCCGAGGUc -3' miRNA: 3'- aGGUG----GGGUCU--CUGGU-----------GGCGGUUCUA- -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 81920 | 0.69 | 0.584454 |
Target: 5'- gCCGCCUCGGAGaagacgaaggcgGCCA-CGCCGAGGc -3' miRNA: 3'- aGGUGGGGUCUC------------UGGUgGCGGUUCUa -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 82331 | 0.68 | 0.625084 |
Target: 5'- gCCACCuCCGcGGGccacACCGCCGCCGuGGUg -3' miRNA: 3'- aGGUGG-GGU-CUC----UGGUGGCGGUuCUA- -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 82402 | 0.67 | 0.716007 |
Target: 5'- cUCCGCgCCCGaGGGCgGCC-CCGAGAg -3' miRNA: 3'- -AGGUG-GGGUcUCUGgUGGcGGUUCUa -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 83413 | 0.67 | 0.706071 |
Target: 5'- gCCACCaCCAGG--UUGCCGCCGGGGg -3' miRNA: 3'- aGGUGG-GGUCUcuGGUGGCGGUUCUa -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 84009 | 0.67 | 0.675926 |
Target: 5'- gUCaACCUCGGGGugCGCCGCCccGAc -3' miRNA: 3'- -AGgUGGGGUCUCugGUGGCGGuuCUa -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 84764 | 0.68 | 0.6149 |
Target: 5'- gCCGCCgaGGAGGCggacgcggcgcgCGCCGCCGAGGa -3' miRNA: 3'- aGGUGGggUCUCUG------------GUGGCGGUUCUa -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 86962 | 0.7 | 0.50521 |
Target: 5'- cUCgGCCgCCAuGGACCGCCGCCAc--- -3' miRNA: 3'- -AGgUGG-GGUcUCUGGUGGCGGUucua -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 87002 | 0.66 | 0.745353 |
Target: 5'- cCCgaGCCCCGGcc-CC-CCGCCAGGAa -3' miRNA: 3'- aGG--UGGGGUCucuGGuGGCGGUUCUa -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 87063 | 0.68 | 0.625084 |
Target: 5'- aCUACCCCGGGGAggCGCCGCCc---- -3' miRNA: 3'- aGGUGGGGUCUCUg-GUGGCGGuucua -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 87190 | 0.67 | 0.725872 |
Target: 5'- gCCGCCgCAGcuGCUGCCGCCcGGGg -3' miRNA: 3'- aGGUGGgGUCucUGGUGGCGGuUCUa -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 87497 | 0.7 | 0.544365 |
Target: 5'- gCCGCCCCcGuucAGGCCGCCGCCc---- -3' miRNA: 3'- aGGUGGGGuC---UCUGGUGGCGGuucua -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 88275 | 0.68 | 0.635274 |
Target: 5'- -gCGCaCC-GAGACCGCCGCCGGGu- -3' miRNA: 3'- agGUGgGGuCUCUGGUGGCGGUUCua -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 89937 | 0.68 | 0.655637 |
Target: 5'- -gCGCCCCAGGuccgcGGgCGCgGCCAGGAa -3' miRNA: 3'- agGUGGGGUCU-----CUgGUGgCGGUUCUa -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 91906 | 0.69 | 0.584454 |
Target: 5'- gCCACCgucuggugcgcUCGGAGGCCaucuccacGCCGCCGGGGg -3' miRNA: 3'- aGGUGG-----------GGUCUCUGG--------UGGCGGUUCUa -5' |
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29518 | 3' | -58.7 | NC_006151.1 | + | 97864 | 0.66 | 0.764441 |
Target: 5'- gUCCGCguuCUCGGcGGCCGCCaCCAGGAa -3' miRNA: 3'- -AGGUG---GGGUCuCUGGUGGcGGUUCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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