miRNA display CGI


Results 81 - 100 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29518 3' -58.7 NC_006151.1 + 101850 0.68 0.659703
Target:  5'- cCCGCCCCGGcacccGGcggcgcaccgcucccGCCGCCGCCGcGGGUc -3'
miRNA:   3'- aGGUGGGGUC-----UC---------------UGGUGGCGGU-UCUA- -5'
29518 3' -58.7 NC_006151.1 + 102903 0.68 0.635274
Target:  5'- gCCGCCUCGucGACUcgcuggcgGCCGCCGAGGa -3'
miRNA:   3'- aGGUGGGGUcuCUGG--------UGGCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 103193 0.66 0.773814
Target:  5'- gCCGCCCUGGcGGCCGCC-CCGgacgaGGAg -3'
miRNA:   3'- aGGUGGGGUCuCUGGUGGcGGU-----UCUa -5'
29518 3' -58.7 NC_006151.1 + 104159 0.66 0.745353
Target:  5'- -aCGCCgCGGAGcugcgccCCGCCGCCGAGc- -3'
miRNA:   3'- agGUGGgGUCUCu------GGUGGCGGUUCua -5'
29518 3' -58.7 NC_006151.1 + 107275 0.66 0.782144
Target:  5'- gCCACCUCGGAGgagcuguACgGCCGgCCGAGc- -3'
miRNA:   3'- aGGUGGGGUCUC-------UGgUGGC-GGUUCua -5'
29518 3' -58.7 NC_006151.1 + 107535 0.66 0.754951
Target:  5'- gUUgGCCCCGGcGGCC-CCGCCGGc-- -3'
miRNA:   3'- -AGgUGGGGUCuCUGGuGGCGGUUcua -5'
29518 3' -58.7 NC_006151.1 + 107569 0.67 0.716007
Target:  5'- gCCaaGCCCgCGGAGcugacucCCGCCGCCAAGc- -3'
miRNA:   3'- aGG--UGGG-GUCUCu------GGUGGCGGUUCua -5'
29518 3' -58.7 NC_006151.1 + 107689 0.66 0.745353
Target:  5'- gCCGCCCacaAGaAGcCCGCCGCCGGc-- -3'
miRNA:   3'- aGGUGGGg--UC-UCuGGUGGCGGUUcua -5'
29518 3' -58.7 NC_006151.1 + 107874 0.68 0.635274
Target:  5'- gCCcCCCCGGAGGCC-CC-CCAGGc- -3'
miRNA:   3'- aGGuGGGGUCUCUGGuGGcGGUUCua -5'
29518 3' -58.7 NC_006151.1 + 107926 0.73 0.379635
Target:  5'- cCCaACCCCAGGGucccCCACCGCCGc--- -3'
miRNA:   3'- aGG-UGGGGUCUCu---GGUGGCGGUucua -5'
29518 3' -58.7 NC_006151.1 + 107978 0.67 0.700079
Target:  5'- cCCugCCCAGaAGcccccggcgcagcccGCCACCGCCGc--- -3'
miRNA:   3'- aGGugGGGUC-UC---------------UGGUGGCGGUucua -5'
29518 3' -58.7 NC_006151.1 + 108036 0.7 0.554314
Target:  5'- gCCACCCCccAGACUcaGCCGCCGAc-- -3'
miRNA:   3'- aGGUGGGGucUCUGG--UGGCGGUUcua -5'
29518 3' -58.7 NC_006151.1 + 108324 0.66 0.754951
Target:  5'- cCCGCgCCCGG-GcCCGCCccaucgGCCAAGAa -3'
miRNA:   3'- aGGUG-GGGUCuCuGGUGG------CGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 108703 0.68 0.645461
Target:  5'- cUCCuggagcCCCCGGGagugguGGCCAgCGCCGAGGa -3'
miRNA:   3'- -AGGu-----GGGGUCU------CUGGUgGCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 109091 0.74 0.325171
Target:  5'- gUCgGCCCCGGAGGCCcagugaggcgaGCCGCCGGc-- -3'
miRNA:   3'- -AGgUGGGGUCUCUGG-----------UGGCGGUUcua -5'
29518 3' -58.7 NC_006151.1 + 109226 0.75 0.289957
Target:  5'- cCCGCCCCGGcgcAGACCcaGCCGCCGcGGUc -3'
miRNA:   3'- aGGUGGGGUC---UCUGG--UGGCGGUuCUA- -5'
29518 3' -58.7 NC_006151.1 + 109283 0.67 0.706071
Target:  5'- gCCGCCCCcuccGAGAucgagcggcCCGCCGCCucGGc -3'
miRNA:   3'- aGGUGGGGu---CUCU---------GGUGGCGGuuCUa -5'
29518 3' -58.7 NC_006151.1 + 109378 0.69 0.604729
Target:  5'- uUCCGCCCCcgccgcACCACCGCCGGc-- -3'
miRNA:   3'- -AGGUGGGGucuc--UGGUGGCGGUUcua -5'
29518 3' -58.7 NC_006151.1 + 109735 0.66 0.783063
Target:  5'- cUCGCCgCUGGAGcggaugccgugGCCGCCGCCGuuGGAg -3'
miRNA:   3'- aGGUGG-GGUCUC-----------UGGUGGCGGU--UCUa -5'
29518 3' -58.7 NC_006151.1 + 109783 0.66 0.735657
Target:  5'- aCCACCCCcGAG-CUcCCGCC-GGAg -3'
miRNA:   3'- aGGUGGGGuCUCuGGuGGCGGuUCUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.