miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29518 3' -58.7 NC_006151.1 + 108324 0.66 0.754951
Target:  5'- cCCGCgCCCGG-GcCCGCCccaucgGCCAAGAa -3'
miRNA:   3'- aGGUG-GGGUCuCuGGUGG------CGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 108036 0.7 0.554314
Target:  5'- gCCACCCCccAGACUcaGCCGCCGAc-- -3'
miRNA:   3'- aGGUGGGGucUCUGG--UGGCGGUUcua -5'
29518 3' -58.7 NC_006151.1 + 107978 0.67 0.700079
Target:  5'- cCCugCCCAGaAGcccccggcgcagcccGCCACCGCCGc--- -3'
miRNA:   3'- aGGugGGGUC-UC---------------UGGUGGCGGUucua -5'
29518 3' -58.7 NC_006151.1 + 107926 0.73 0.379635
Target:  5'- cCCaACCCCAGGGucccCCACCGCCGc--- -3'
miRNA:   3'- aGG-UGGGGUCUCu---GGUGGCGGUucua -5'
29518 3' -58.7 NC_006151.1 + 107874 0.68 0.635274
Target:  5'- gCCcCCCCGGAGGCC-CC-CCAGGc- -3'
miRNA:   3'- aGGuGGGGUCUCUGGuGGcGGUUCua -5'
29518 3' -58.7 NC_006151.1 + 107689 0.66 0.745353
Target:  5'- gCCGCCCacaAGaAGcCCGCCGCCGGc-- -3'
miRNA:   3'- aGGUGGGg--UC-UCuGGUGGCGGUUcua -5'
29518 3' -58.7 NC_006151.1 + 107569 0.67 0.716007
Target:  5'- gCCaaGCCCgCGGAGcugacucCCGCCGCCAAGc- -3'
miRNA:   3'- aGG--UGGG-GUCUCu------GGUGGCGGUUCua -5'
29518 3' -58.7 NC_006151.1 + 107535 0.66 0.754951
Target:  5'- gUUgGCCCCGGcGGCC-CCGCCGGc-- -3'
miRNA:   3'- -AGgUGGGGUCuCUGGuGGCGGUUcua -5'
29518 3' -58.7 NC_006151.1 + 107275 0.66 0.782144
Target:  5'- gCCACCUCGGAGgagcuguACgGCCGgCCGAGc- -3'
miRNA:   3'- aGGUGGGGUCUC-------UGgUGGC-GGUUCua -5'
29518 3' -58.7 NC_006151.1 + 104159 0.66 0.745353
Target:  5'- -aCGCCgCGGAGcugcgccCCGCCGCCGAGc- -3'
miRNA:   3'- agGUGGgGUCUCu------GGUGGCGGUUCua -5'
29518 3' -58.7 NC_006151.1 + 103193 0.66 0.773814
Target:  5'- gCCGCCCUGGcGGCCGCC-CCGgacgaGGAg -3'
miRNA:   3'- aGGUGGGGUCuCUGGUGGcGGU-----UCUa -5'
29518 3' -58.7 NC_006151.1 + 102903 0.68 0.635274
Target:  5'- gCCGCCUCGucGACUcgcuggcgGCCGCCGAGGa -3'
miRNA:   3'- aGGUGGGGUcuCUGG--------UGGCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 101850 0.68 0.659703
Target:  5'- cCCGCCCCGGcacccGGcggcgcaccgcucccGCCGCCGCCGcGGGUc -3'
miRNA:   3'- aGGUGGGGUC-----UC---------------UGGUGGCGGU-UCUA- -5'
29518 3' -58.7 NC_006151.1 + 97864 0.66 0.764441
Target:  5'- gUCCGCguuCUCGGcGGCCGCCaCCAGGAa -3'
miRNA:   3'- -AGGUG---GGGUCuCUGGUGGcGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 91906 0.69 0.584454
Target:  5'- gCCACCgucuggugcgcUCGGAGGCCaucuccacGCCGCCGGGGg -3'
miRNA:   3'- aGGUGG-----------GGUCUCUGG--------UGGCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 89937 0.68 0.655637
Target:  5'- -gCGCCCCAGGuccgcGGgCGCgGCCAGGAa -3'
miRNA:   3'- agGUGGGGUCU-----CUgGUGgCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 88275 0.68 0.635274
Target:  5'- -gCGCaCC-GAGACCGCCGCCGGGu- -3'
miRNA:   3'- agGUGgGGuCUCUGGUGGCGGUUCua -5'
29518 3' -58.7 NC_006151.1 + 87497 0.7 0.544365
Target:  5'- gCCGCCCCcGuucAGGCCGCCGCCc---- -3'
miRNA:   3'- aGGUGGGGuC---UCUGGUGGCGGuucua -5'
29518 3' -58.7 NC_006151.1 + 87190 0.67 0.725872
Target:  5'- gCCGCCgCAGcuGCUGCCGCCcGGGg -3'
miRNA:   3'- aGGUGGgGUCucUGGUGGCGGuUCUa -5'
29518 3' -58.7 NC_006151.1 + 87063 0.68 0.625084
Target:  5'- aCUACCCCGGGGAggCGCCGCCc---- -3'
miRNA:   3'- aGGUGGGGUCUCUg-GUGGCGGuucua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.