miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29518 3' -58.7 NC_006151.1 + 87002 0.66 0.745353
Target:  5'- cCCgaGCCCCGGcc-CC-CCGCCAGGAa -3'
miRNA:   3'- aGG--UGGGGUCucuGGuGGCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 86962 0.7 0.50521
Target:  5'- cUCgGCCgCCAuGGACCGCCGCCAc--- -3'
miRNA:   3'- -AGgUGG-GGUcUCUGGUGGCGGUucua -5'
29518 3' -58.7 NC_006151.1 + 84764 0.68 0.6149
Target:  5'- gCCGCCgaGGAGGCggacgcggcgcgCGCCGCCGAGGa -3'
miRNA:   3'- aGGUGGggUCUCUG------------GUGGCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 84009 0.67 0.675926
Target:  5'- gUCaACCUCGGGGugCGCCGCCccGAc -3'
miRNA:   3'- -AGgUGGGGUCUCugGUGGCGGuuCUa -5'
29518 3' -58.7 NC_006151.1 + 83413 0.67 0.706071
Target:  5'- gCCACCaCCAGG--UUGCCGCCGGGGg -3'
miRNA:   3'- aGGUGG-GGUCUcuGGUGGCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 82402 0.67 0.716007
Target:  5'- cUCCGCgCCCGaGGGCgGCC-CCGAGAg -3'
miRNA:   3'- -AGGUG-GGGUcUCUGgUGGcGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 82331 0.68 0.625084
Target:  5'- gCCACCuCCGcGGGccacACCGCCGCCGuGGUg -3'
miRNA:   3'- aGGUGG-GGU-CUC----UGGUGGCGGUuCUA- -5'
29518 3' -58.7 NC_006151.1 + 81920 0.69 0.584454
Target:  5'- gCCGCCUCGGAGaagacgaaggcgGCCA-CGCCGAGGc -3'
miRNA:   3'- aGGUGGGGUCUC------------UGGUgGCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 81393 0.66 0.764441
Target:  5'- gCCGCggcgCCCAGGuuGGCCAggguggcguccCCGCCGAGGUc -3'
miRNA:   3'- aGGUG----GGGUCU--CUGGU-----------GGCGGUUCUA- -5'
29518 3' -58.7 NC_006151.1 + 81329 0.66 0.754951
Target:  5'- cUCCGCCCCcucguccGucGCCGCCGCCGcgcccGGGg -3'
miRNA:   3'- -AGGUGGGGu------CucUGGUGGCGGU-----UCUa -5'
29518 3' -58.7 NC_006151.1 + 80803 0.76 0.239949
Target:  5'- gCCGCCCCcacgacGGAGGCCACCacguagGCCGGGAc -3'
miRNA:   3'- aGGUGGGG------UCUCUGGUGG------CGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 79687 0.71 0.467316
Target:  5'- gCCGCCgCGGGGACCGCaGCCGAa-- -3'
miRNA:   3'- aGGUGGgGUCUCUGGUGgCGGUUcua -5'
29518 3' -58.7 NC_006151.1 + 79615 0.69 0.574364
Target:  5'- gCCACaaCCCGGAGcGCCGCCGUCGccgcuGGAUc -3'
miRNA:   3'- aGGUG--GGGUCUC-UGGUGGCGGU-----UCUA- -5'
29518 3' -58.7 NC_006151.1 + 79052 0.67 0.696072
Target:  5'- aUCCGCCCCGaagcccGAGAacccaacccCCACCGCCc---- -3'
miRNA:   3'- -AGGUGGGGU------CUCU---------GGUGGCGGuucua -5'
29518 3' -58.7 NC_006151.1 + 70701 0.67 0.686021
Target:  5'- aCCGCCCCuccucGGuGGCCaACCGCCGc--- -3'
miRNA:   3'- aGGUGGGG-----UCuCUGG-UGGCGGUucua -5'
29518 3' -58.7 NC_006151.1 + 69690 0.68 0.6149
Target:  5'- -gCGCCUCgccgucgauGGuGGCCGCCGCCGGGGg -3'
miRNA:   3'- agGUGGGG---------UCuCUGGUGGCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 69291 0.66 0.764441
Target:  5'- -gCGCCaCCAGGGACacggGCCGCCGGc-- -3'
miRNA:   3'- agGUGG-GGUCUCUGg---UGGCGGUUcua -5'
29518 3' -58.7 NC_006151.1 + 67028 0.66 0.745353
Target:  5'- -gCugCUCGGGGACCA-CGCCGAGc- -3'
miRNA:   3'- agGugGGGUCUCUGGUgGCGGUUCua -5'
29518 3' -58.7 NC_006151.1 + 66894 0.77 0.21776
Target:  5'- cCCGCgCCGGAGGaCGCCGCCGAGGa -3'
miRNA:   3'- aGGUGgGGUCUCUgGUGGCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 66132 0.66 0.745353
Target:  5'- cUCCACCCgGGcGGCCAgCCGC--AGGUg -3'
miRNA:   3'- -AGGUGGGgUCuCUGGU-GGCGguUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.