miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29518 3' -58.7 NC_006151.1 + 66060 0.68 0.625084
Target:  5'- gUCCaggACCCCGcGGACgGCCGCCuGGGc -3'
miRNA:   3'- -AGG---UGGGGUcUCUGgUGGCGGuUCUa -5'
29518 3' -58.7 NC_006151.1 + 61847 0.68 0.655637
Target:  5'- gCCGCCCCGGGGACCcugauGCucggcgcgucugCGCCuGGAc -3'
miRNA:   3'- aGGUGGGGUCUCUGG-----UG------------GCGGuUCUa -5'
29518 3' -58.7 NC_006151.1 + 61456 0.66 0.735657
Target:  5'- gUCCGCCgCCAugugcGGGCCGCgcaaCGCCGAGGc -3'
miRNA:   3'- -AGGUGG-GGUc----UCUGGUG----GCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 55772 0.66 0.783063
Target:  5'- gCCACCUCGGcuuccucAUCACCaGCCAGGAg -3'
miRNA:   3'- aGGUGGGGUCuc-----UGGUGG-CGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 54140 0.68 0.665795
Target:  5'- cUCUGCCCCGGcGG-CGCCGCgGAGGa -3'
miRNA:   3'- -AGGUGGGGUCuCUgGUGGCGgUUCUa -5'
29518 3' -58.7 NC_006151.1 + 51332 0.67 0.686021
Target:  5'- aCCGCUCCGGcuccccGuCCACgGCCAGGAc -3'
miRNA:   3'- aGGUGGGGUCu-----CuGGUGgCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 51286 0.74 0.310715
Target:  5'- -gCGCCCuCGGGGGCCGCCGgCCAGGu- -3'
miRNA:   3'- agGUGGG-GUCUCUGGUGGC-GGUUCua -5'
29518 3' -58.7 NC_006151.1 + 50781 0.71 0.455317
Target:  5'- gCCGCCCCGacgccccagcugccGAGACC-CCGCCAGc-- -3'
miRNA:   3'- aGGUGGGGU--------------CUCUGGuGGCGGUUcua -5'
29518 3' -58.7 NC_006151.1 + 48794 0.67 0.67289
Target:  5'- cCCgACCCCGGGGcgcccacgugggacGCCuucGCCGCCGAGu- -3'
miRNA:   3'- aGG-UGGGGUCUC--------------UGG---UGGCGGUUCua -5'
29518 3' -58.7 NC_006151.1 + 48333 0.68 0.625084
Target:  5'- gCUGCCgCCGGAcauGACCGCCGUCAcGAg -3'
miRNA:   3'- aGGUGG-GGUCU---CUGGUGGCGGUuCUa -5'
29518 3' -58.7 NC_006151.1 + 48291 0.66 0.754951
Target:  5'- gCCGCCCguGGGAUCgcGCUGCCAc--- -3'
miRNA:   3'- aGGUGGGguCUCUGG--UGGCGGUucua -5'
29518 3' -58.7 NC_006151.1 + 46827 0.78 0.178629
Target:  5'- cUCUGCCCCcGAGACCGCCGCCccccGGGg -3'
miRNA:   3'- -AGGUGGGGuCUCUGGUGGCGGu---UCUa -5'
29518 3' -58.7 NC_006151.1 + 46735 0.66 0.783063
Target:  5'- gCCGgCCCGGGGucggcgaacACCGCCGCUucGGc -3'
miRNA:   3'- aGGUgGGGUCUC---------UGGUGGCGGuuCUa -5'
29518 3' -58.7 NC_006151.1 + 46539 0.7 0.534474
Target:  5'- gUCCGCggacgaCCAGAGGCCGgCGCCcAGGc -3'
miRNA:   3'- -AGGUGg-----GGUCUCUGGUgGCGGuUCUa -5'
29518 3' -58.7 NC_006151.1 + 46157 0.7 0.544365
Target:  5'- cCCGCCCCAGAGuCC-CCGUCu---- -3'
miRNA:   3'- aGGUGGGGUCUCuGGuGGCGGuucua -5'
29518 3' -58.7 NC_006151.1 + 45777 0.74 0.303672
Target:  5'- aCCGCCCCAGAagccccucGCCACCGCCGc--- -3'
miRNA:   3'- aGGUGGGGUCUc-------UGGUGGCGGUucua -5'
29518 3' -58.7 NC_006151.1 + 45701 0.67 0.681988
Target:  5'- aCCAugggcugcacggucUCUCGGAgacggacGACCACCGCCGAGGc -3'
miRNA:   3'- aGGU--------------GGGGUCU-------CUGGUGGCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 44020 0.74 0.332584
Target:  5'- cCCGCCCCgcGGGGAgCCgGCCGUCGAGAa -3'
miRNA:   3'- aGGUGGGG--UCUCU-GG-UGGCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 40039 0.69 0.564315
Target:  5'- gCCGCCgCCGGGGG-CGCCGUgGAGAc -3'
miRNA:   3'- aGGUGG-GGUCUCUgGUGGCGgUUCUa -5'
29518 3' -58.7 NC_006151.1 + 39574 0.73 0.363466
Target:  5'- -gCACCCCGGGGccgagccgcugcGCCucuGCCGCCAGGAc -3'
miRNA:   3'- agGUGGGGUCUC------------UGG---UGGCGGUUCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.