miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29518 3' -58.7 NC_006151.1 + 39094 0.67 0.725872
Target:  5'- gCUGCCCCAcGAGgagcucugcGCCGagcCCGCCGAGGg -3'
miRNA:   3'- aGGUGGGGU-CUC---------UGGU---GGCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 38575 0.7 0.544365
Target:  5'- gCCGCgcgCCCGGGGcCCGCCGCCccgGGGAc -3'
miRNA:   3'- aGGUG---GGGUCUCuGGUGGCGG---UUCUa -5'
29518 3' -58.7 NC_006151.1 + 38261 0.67 0.725872
Target:  5'- cUUCGCCCCGGccaacguGGCCGCggcccggcuCGCCGAGGc -3'
miRNA:   3'- -AGGUGGGGUCu------CUGGUG---------GCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 38058 0.66 0.773814
Target:  5'- gCCGCCCUcGGGcCCGCCuGCCucGAg -3'
miRNA:   3'- aGGUGGGGuCUCuGGUGG-CGGuuCUa -5'
29518 3' -58.7 NC_006151.1 + 37880 0.7 0.554314
Target:  5'- cCCGCgCCggGGAGGCgACCGUCGAGGc -3'
miRNA:   3'- aGGUGgGG--UCUCUGgUGGCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 37551 0.66 0.764441
Target:  5'- -gCGCCUCAucuacagcGGGGCCGCCGgCGAGGc -3'
miRNA:   3'- agGUGGGGU--------CUCUGGUGGCgGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 37243 0.68 0.625084
Target:  5'- cCgGCCCCGGAGcccgcccgGCCcCCGCgCAGGAa -3'
miRNA:   3'- aGgUGGGGUCUC--------UGGuGGCG-GUUCUa -5'
29518 3' -58.7 NC_006151.1 + 37005 0.7 0.544365
Target:  5'- cUCCGCCCCccGGGcccccGCCGCCGCCGc--- -3'
miRNA:   3'- -AGGUGGGGu-CUC-----UGGUGGCGGUucua -5'
29518 3' -58.7 NC_006151.1 + 36705 0.66 0.764441
Target:  5'- cCCugCUCGacGAGcCCGCCGCCGcGAg -3'
miRNA:   3'- aGGugGGGU--CUCuGGUGGCGGUuCUa -5'
29518 3' -58.7 NC_006151.1 + 36071 0.67 0.722921
Target:  5'- uUCgGCCCgGGcGGCCucuucuccgacgacGCCGCCGAGGc -3'
miRNA:   3'- -AGgUGGGgUCuCUGG--------------UGGCGGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 35900 0.67 0.706071
Target:  5'- --gACCCCGaucGAGACCAUgGCCGAcGAUc -3'
miRNA:   3'- aggUGGGGU---CUCUGGUGgCGGUU-CUA- -5'
29518 3' -58.7 NC_006151.1 + 32238 0.67 0.706071
Target:  5'- cUCCugGCCgCGGcGACCGCCGCCGc--- -3'
miRNA:   3'- -AGG--UGGgGUCuCUGGUGGCGGUucua -5'
29518 3' -58.7 NC_006151.1 + 30805 0.66 0.735657
Target:  5'- aUgGCCCCGGGGGCaCGCgGgCGGGAg -3'
miRNA:   3'- aGgUGGGGUCUCUG-GUGgCgGUUCUa -5'
29518 3' -58.7 NC_006151.1 + 23743 0.66 0.764441
Target:  5'- -gCACCUugCAGuGGCCGCCGUCAaAGAa -3'
miRNA:   3'- agGUGGG--GUCuCUGGUGGCGGU-UCUa -5'
29518 3' -58.7 NC_006151.1 + 23513 0.67 0.716007
Target:  5'- cUCCACCgaCAGGGAgaCGgUGCCGAGGUa -3'
miRNA:   3'- -AGGUGGg-GUCUCUg-GUgGCGGUUCUA- -5'
29518 3' -58.7 NC_006151.1 + 22132 0.67 0.716007
Target:  5'- gUCCACCUgcggguCGGAGAUCAgCGCCAc--- -3'
miRNA:   3'- -AGGUGGG------GUCUCUGGUgGCGGUucua -5'
29518 3' -58.7 NC_006151.1 + 21892 0.68 0.65462
Target:  5'- aCCGCCCCGGAG-CCACCaugagcaGCCc---- -3'
miRNA:   3'- aGGUGGGGUCUCuGGUGG-------CGGuucua -5'
29518 3' -58.7 NC_006151.1 + 17069 0.67 0.686021
Target:  5'- gUCAgCCC--GGGCCGCCGCCGGGu- -3'
miRNA:   3'- aGGUgGGGucUCUGGUGGCGGUUCua -5'
29518 3' -58.7 NC_006151.1 + 13951 0.73 0.371491
Target:  5'- -gCGCCCCGGGGACgCGCCgGCCAugggGGAg -3'
miRNA:   3'- agGUGGGGUCUCUG-GUGG-CGGU----UCUa -5'
29518 3' -58.7 NC_006151.1 + 13670 0.71 0.458071
Target:  5'- cCCGCCuCCGGGGACgCGCCgGCCAAu-- -3'
miRNA:   3'- aGGUGG-GGUCUCUG-GUGG-CGGUUcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.