Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29518 | 5' | -46.2 | NC_006151.1 | + | 24347 | 0.66 | 0.99993 |
Target: 5'- gCAUCUCCCCGuu-GAUCgCGGGc-- -3' miRNA: 3'- gGUAGAGGGGUuuuUUAGaGUCUcug -5' |
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29518 | 5' | -46.2 | NC_006151.1 | + | 68823 | 0.66 | 0.99991 |
Target: 5'- aCCAUCUCCCgCGccggcgugugCUC-GAGGCg -3' miRNA: 3'- -GGUAGAGGG-GUuuuuua----GAGuCUCUG- -5' |
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29518 | 5' | -46.2 | NC_006151.1 | + | 109073 | 0.66 | 0.999908 |
Target: 5'- gCCGUCcccgCCCCc-GGAGUCggcccCGGAGGCc -3' miRNA: 3'- -GGUAGa---GGGGuuUUUUAGa----GUCUCUG- -5' |
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29518 | 5' | -46.2 | NC_006151.1 | + | 42765 | 0.66 | 0.999908 |
Target: 5'- cCCcUCUCCCCGGGGGGU----GGGACg -3' miRNA: 3'- -GGuAGAGGGGUUUUUUAgaguCUCUG- -5' |
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29518 | 5' | -46.2 | NC_006151.1 | + | 140991 | 0.67 | 0.999879 |
Target: 5'- cCCAUCUCCCCc----GUCgCAacaccacacgcGAGACg -3' miRNA: 3'- -GGUAGAGGGGuuuuuUAGaGU-----------CUCUG- -5' |
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29518 | 5' | -46.2 | NC_006151.1 | + | 93347 | 0.67 | 0.999842 |
Target: 5'- cCCGUCccacccucgCCCCAAGGAugacggC-CGGAGGCg -3' miRNA: 3'- -GGUAGa--------GGGGUUUUUua----GaGUCUCUG- -5' |
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29518 | 5' | -46.2 | NC_006151.1 | + | 80573 | 0.67 | 0.999837 |
Target: 5'- gCCGUCUCCCCGA-------CGGAcGGCg -3' miRNA: 3'- -GGUAGAGGGGUUuuuuagaGUCU-CUG- -5' |
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29518 | 5' | -46.2 | NC_006151.1 | + | 125009 | 0.67 | 0.999664 |
Target: 5'- gCGUC-CUCCGcGAGGcCUCGGAGGCc -3' miRNA: 3'- gGUAGaGGGGUuUUUUaGAGUCUCUG- -5' |
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29518 | 5' | -46.2 | NC_006151.1 | + | 37414 | 0.67 | 0.999664 |
Target: 5'- gCCGgggaCUCCCgCGAGGGG-CUCuGGGACg -3' miRNA: 3'- -GGUa---GAGGG-GUUUUUUaGAGuCUCUG- -5' |
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29518 | 5' | -46.2 | NC_006151.1 | + | 29947 | 0.68 | 0.999613 |
Target: 5'- uCCAUCUCUCCuggccgagCUCGGAccgcGGCg -3' miRNA: 3'- -GGUAGAGGGGuuuuuua-GAGUCU----CUG- -5' |
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29518 | 5' | -46.2 | NC_006151.1 | + | 80639 | 0.68 | 0.999317 |
Target: 5'- cCCGUCUCCCCcgcgcccgacaagGAAAAAcacgCgcacgCAGAGAg -3' miRNA: 3'- -GGUAGAGGGG-------------UUUUUUa---Ga----GUCUCUg -5' |
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29518 | 5' | -46.2 | NC_006151.1 | + | 124013 | 0.69 | 0.998936 |
Target: 5'- gCguUCUCCCCcggccc-CUCGGAGGCc -3' miRNA: 3'- -GguAGAGGGGuuuuuuaGAGUCUCUG- -5' |
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29518 | 5' | -46.2 | NC_006151.1 | + | 8188 | 0.69 | 0.998476 |
Target: 5'- gCCGggaCCCCGGGGGcgCUCcgGGAGACg -3' miRNA: 3'- -GGUagaGGGGUUUUUuaGAG--UCUCUG- -5' |
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29518 | 5' | -46.2 | NC_006151.1 | + | 49711 | 0.69 | 0.998476 |
Target: 5'- aCCccCUCCCCGGGAGGgggugCUCGGgagcgaAGACg -3' miRNA: 3'- -GGuaGAGGGGUUUUUUa----GAGUC------UCUG- -5' |
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29518 | 5' | -46.2 | NC_006151.1 | + | 10764 | 0.69 | 0.998155 |
Target: 5'- uCCGUCUCCCUcgccu-UCUCcguuuuggggGGAGACc -3' miRNA: 3'- -GGUAGAGGGGuuuuuuAGAG----------UCUCUG- -5' |
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29518 | 5' | -46.2 | NC_006151.1 | + | 52195 | 0.7 | 0.995574 |
Target: 5'- gCGg--CCCCGAAGAG-CUCGGAGAg -3' miRNA: 3'- gGUagaGGGGUUUUUUaGAGUCUCUg -5' |
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29518 | 5' | -46.2 | NC_006151.1 | + | 12693 | 0.7 | 0.994807 |
Target: 5'- uCCGUcCUCCCCAuuc-AUCUuuuuucCAGAGGCc -3' miRNA: 3'- -GGUA-GAGGGGUuuuuUAGA------GUCUCUG- -5' |
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29518 | 5' | -46.2 | NC_006151.1 | + | 22804 | 0.72 | 0.985964 |
Target: 5'- gCCGUCUCCCCGGcc-GUCaggugCAGGGGg -3' miRNA: 3'- -GGUAGAGGGGUUuuuUAGa----GUCUCUg -5' |
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29518 | 5' | -46.2 | NC_006151.1 | + | 1516 | 1.13 | 0.014361 |
Target: 5'- uCCAUCUCCCCAAAAAAUCUCAGAGACu -3' miRNA: 3'- -GGUAGAGGGGUUUUUUAGAGUCUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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