miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29519 3' -58.3 NC_006151.1 + 96710 0.66 0.811877
Target:  5'- cGCcGGGGGcggcGGcGGACGaGGAGGCGGc- -3'
miRNA:   3'- -CGaCCCUCa---CC-CCUGC-CUUCUGCCuu -5'
29519 3' -58.3 NC_006151.1 + 121554 0.66 0.811877
Target:  5'- --gGGGAGgaggaGGGGAa-GggGACGGGc -3'
miRNA:   3'- cgaCCCUCa----CCCCUgcCuuCUGCCUu -5'
29519 3' -58.3 NC_006151.1 + 110633 0.66 0.811877
Target:  5'- cUUGGGGGgacuuggGGGGACuugGGggGACuuGGGGg -3'
miRNA:   3'- cGACCCUCa------CCCCUG---CCuuCUG--CCUU- -5'
29519 3' -58.3 NC_006151.1 + 110593 0.66 0.811877
Target:  5'- cUUGGGGGgacuuggGGGGACuugGGggGACuuGGGGg -3'
miRNA:   3'- cGACCCUCa------CCCCUG---CCuuCUG--CCUU- -5'
29519 3' -58.3 NC_006151.1 + 41194 0.66 0.811877
Target:  5'- --gGGGGGUGGGGGgGGAaagagAGAaaGAGa -3'
miRNA:   3'- cgaCCCUCACCCCUgCCU-----UCUgcCUU- -5'
29519 3' -58.3 NC_006151.1 + 18130 0.66 0.809271
Target:  5'- cGCUGGGGucgaacguguccauGUcggcGGGGGCGGc-GGCGGGc -3'
miRNA:   3'- -CGACCCU--------------CA----CCCCUGCCuuCUGCCUu -5'
29519 3' -58.3 NC_006151.1 + 44312 0.66 0.803135
Target:  5'- uGCgaagGGGAGgggaaGGGGAaaaGGAgaggagggccgcGGACGGGu -3'
miRNA:   3'- -CGa---CCCUCa----CCCCUg--CCU------------UCUGCCUu -5'
29519 3' -58.3 NC_006151.1 + 41860 0.67 0.751616
Target:  5'- -aUGGGGG-GGGGGgGGAGGAgcccggcgucacgucCGGGGa -3'
miRNA:   3'- cgACCCUCaCCCCUgCCUUCU---------------GCCUU- -5'
29519 3' -58.3 NC_006151.1 + 130924 0.67 0.747794
Target:  5'- gGCcGGGcccGcGGGGGCGGggGcgGCGGGGg -3'
miRNA:   3'- -CGaCCCu--CaCCCCUGCCuuC--UGCCUU- -5'
29519 3' -58.3 NC_006151.1 + 45595 0.67 0.747794
Target:  5'- --aGGGGGcGGGGggagccccgACGGGgcGGGCGGAAg -3'
miRNA:   3'- cgaCCCUCaCCCC---------UGCCU--UCUGCCUU- -5'
29519 3' -58.3 NC_006151.1 + 23412 0.67 0.747794
Target:  5'- cGCUGGuGGucgccggccGUGGGGGCGauGGGugGGAGg -3'
miRNA:   3'- -CGACC-CU---------CACCCCUGCc-UUCugCCUU- -5'
29519 3' -58.3 NC_006151.1 + 27490 0.67 0.738169
Target:  5'- gGCgGGGuGGUGGGaACGG-GGugGGAGg -3'
miRNA:   3'- -CGaCCC-UCACCCcUGCCuUCugCCUU- -5'
29519 3' -58.3 NC_006151.1 + 142379 0.67 0.757318
Target:  5'- gGUUGGGGGaaaggGGGGAacgaGGggGuuGGGGg -3'
miRNA:   3'- -CGACCCUCa----CCCCUg---CCuuCugCCUU- -5'
29519 3' -58.3 NC_006151.1 + 142431 0.67 0.757318
Target:  5'- gGUUGGGGGaaaggGGGGAacgaGGggGuuGGGGg -3'
miRNA:   3'- -CGACCCUCa----CCCCUg---CCuuCugCCUU- -5'
29519 3' -58.3 NC_006151.1 + 142483 0.67 0.757318
Target:  5'- gGUUGGGGGaaaggGGGGAacgaGGggGuuGGGGg -3'
miRNA:   3'- -CGACCCUCa----CCCCUg---CCuuCugCCUU- -5'
29519 3' -58.3 NC_006151.1 + 142535 0.67 0.757318
Target:  5'- gGUUGGGGGaaaggGGGGAacgaGGggGuuGGGGg -3'
miRNA:   3'- -CGACCCUCa----CCCCUg---CCuuCugCCUU- -5'
29519 3' -58.3 NC_006151.1 + 8050 0.67 0.757318
Target:  5'- --aGGGAGUuggGGGGAgGGGAgccaagauggcGACGGGg -3'
miRNA:   3'- cgaCCCUCA---CCCCUgCCUU-----------CUGCCUu -5'
29519 3' -58.3 NC_006151.1 + 29210 0.67 0.757318
Target:  5'- cGCgGcGGGGUGGGGAUGGGucaccGcCGGGu -3'
miRNA:   3'- -CGaC-CCUCACCCCUGCCUu----CuGCCUu -5'
29519 3' -58.3 NC_006151.1 + 5038 0.67 0.757318
Target:  5'- gGCcgGGGAGgccgcGGcGGAgGaGGAGGCGGAGg -3'
miRNA:   3'- -CGa-CCCUCa----CC-CCUgC-CUUCUGCCUU- -5'
29519 3' -58.3 NC_006151.1 + 41373 0.67 0.738169
Target:  5'- --gGGGAGggaaaGGcGGugGGAgagcGGGCGGAAc -3'
miRNA:   3'- cgaCCCUCa----CC-CCugCCU----UCUGCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.