miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29519 3' -58.3 NC_006151.1 + 27490 0.67 0.738169
Target:  5'- gGCgGGGuGGUGGGaACGG-GGugGGAGg -3'
miRNA:   3'- -CGaCCC-UCACCCcUGCCuUCugCCUU- -5'
29519 3' -58.3 NC_006151.1 + 10357 0.67 0.728455
Target:  5'- cGC-GGGAGgggaGGGGAgGGAGGGgaGGGGg -3'
miRNA:   3'- -CGaCCCUCa---CCCCUgCCUUCUg-CCUU- -5'
29519 3' -58.3 NC_006151.1 + 110555 0.67 0.728455
Target:  5'- cUUGGGGGgauugGGGGACuugGGggGACuuGGGGg -3'
miRNA:   3'- cGACCCUCa----CCCCUG---CCuuCUG--CCUU- -5'
29519 3' -58.3 NC_006151.1 + 110498 0.67 0.728455
Target:  5'- cUUGGGGGgauugGGGGACuugGGggGACuuGGGGg -3'
miRNA:   3'- cGACCCUCa----CCCCUG---CCuuCUG--CCUU- -5'
29519 3' -58.3 NC_006151.1 + 80022 0.67 0.718658
Target:  5'- cGCguucGGcGAucGGGGACGGGggAGGCGGGAg -3'
miRNA:   3'- -CGa---CC-CUcaCCCCUGCCU--UCUGCCUU- -5'
29519 3' -58.3 NC_006151.1 + 43352 0.68 0.708788
Target:  5'- aGC-GGGAGgGGGGGgGGGAGAgagaccguCGGGGg -3'
miRNA:   3'- -CGaCCCUCaCCCCUgCCUUCU--------GCCUU- -5'
29519 3' -58.3 NC_006151.1 + 42337 0.68 0.698855
Target:  5'- uGCgacGGGAGUGGagcGGAgGGGAGG-GGAAa -3'
miRNA:   3'- -CGa--CCCUCACC---CCUgCCUUCUgCCUU- -5'
29519 3' -58.3 NC_006151.1 + 51029 0.68 0.698855
Target:  5'- -aUGGGGGUgggauGGGGAUGGu-GACGGu- -3'
miRNA:   3'- cgACCCUCA-----CCCCUGCCuuCUGCCuu -5'
29519 3' -58.3 NC_006151.1 + 87782 0.68 0.678833
Target:  5'- gGCgGGagaGAGUGuGGGugGGAgagGGugGGAGa -3'
miRNA:   3'- -CGaCC---CUCAC-CCCugCCU---UCugCCUU- -5'
29519 3' -58.3 NC_006151.1 + 9932 0.68 0.678833
Target:  5'- cCUcGGAGaUGGGGACGcGGAGAaGGAAa -3'
miRNA:   3'- cGAcCCUC-ACCCCUGC-CUUCUgCCUU- -5'
29519 3' -58.3 NC_006151.1 + 27816 0.68 0.678833
Target:  5'- --cGGGGGaGGGGAgGGggGA-GGAGc -3'
miRNA:   3'- cgaCCCUCaCCCCUgCCuuCUgCCUU- -5'
29519 3' -58.3 NC_006151.1 + 110043 0.68 0.668761
Target:  5'- --cGaGGAG-GGGGAC-GAGGACGGGGa -3'
miRNA:   3'- cgaC-CCUCaCCCCUGcCUUCUGCCUU- -5'
29519 3' -58.3 NC_006151.1 + 31411 0.68 0.668761
Target:  5'- gGCgagGGGAa-GGGGAagggGGggGACGGGGu -3'
miRNA:   3'- -CGa--CCCUcaCCCCUg---CCuuCUGCCUU- -5'
29519 3' -58.3 NC_006151.1 + 44463 0.68 0.65866
Target:  5'- cGCgaugGGGGGUgagGGuGGACGGGgggGGugGGGGa -3'
miRNA:   3'- -CGa---CCCUCA---CC-CCUGCCU---UCugCCUU- -5'
29519 3' -58.3 NC_006151.1 + 10397 0.69 0.648538
Target:  5'- --aGGGAG-GGGGGgGGAGaGCGGGGu -3'
miRNA:   3'- cgaCCCUCaCCCCUgCCUUcUGCCUU- -5'
29519 3' -58.3 NC_006151.1 + 20102 0.69 0.647525
Target:  5'- gGCUGGGGGacgGgcgccccggcgacGGGGCuGGggGGCGGGc -3'
miRNA:   3'- -CGACCCUCa--C-------------CCCUG-CCuuCUGCCUu -5'
29519 3' -58.3 NC_006151.1 + 16426 0.69 0.618127
Target:  5'- --gGGGAGUGGGaugggguggaGACGGuGGAgGGAGa -3'
miRNA:   3'- cgaCCCUCACCC----------CUGCCuUCUgCCUU- -5'
29519 3' -58.3 NC_006151.1 + 16391 0.69 0.618127
Target:  5'- --gGGGAGUGGGaugggguggaGACGGuGGAgGGAGa -3'
miRNA:   3'- cgaCCCUCACCC----------CUGCCuUCUgCCUU- -5'
29519 3' -58.3 NC_006151.1 + 16356 0.69 0.618127
Target:  5'- --gGGGAGUGGGaugggguggaGACGGuGGAgGGAGa -3'
miRNA:   3'- cgaCCCUCACCC----------CUGCCuUCUgCCUU- -5'
29519 3' -58.3 NC_006151.1 + 16321 0.69 0.618127
Target:  5'- --gGGGAGUGGGaugggguggaGACGGuGGAgGGAGa -3'
miRNA:   3'- cgaCCCUCACCC----------CUGCCuUCUgCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.