miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29519 5' -61.7 NC_006151.1 + 142950 0.67 0.564205
Target:  5'- ----gCGCCCGCccUCgCCCAUCGCCa- -3'
miRNA:   3'- acaagGCGGGCG--AGaGGGUGGCGGaa -5'
29519 5' -61.7 NC_006151.1 + 136960 0.67 0.574073
Target:  5'- cUGcgCCGCCUGCUggagCUgGCCGCCg- -3'
miRNA:   3'- -ACaaGGCGGGCGAga--GGgUGGCGGaa -5'
29519 5' -61.7 NC_006151.1 + 133007 0.65 0.640884
Target:  5'- -cUUCCGCCCggggguGCUCUCgUccaggacggcguugGCCGCCUc -3'
miRNA:   3'- acAAGGCGGG------CGAGAGgG--------------UGGCGGAa -5'
29519 5' -61.7 NC_006151.1 + 127775 0.67 0.544612
Target:  5'- cGUcgUCGCCCuccccCUCcCCCGCCGCCg- -3'
miRNA:   3'- aCAa-GGCGGGc----GAGaGGGUGGCGGaa -5'
29519 5' -61.7 NC_006151.1 + 126726 0.66 0.63388
Target:  5'- --cUCCGUCC-CUCUCCCcuCCGuCCUc -3'
miRNA:   3'- acaAGGCGGGcGAGAGGGu-GGC-GGAa -5'
29519 5' -61.7 NC_006151.1 + 122543 0.73 0.244063
Target:  5'- gUGUUCCgGCCCGC-CUCgCGgCGCCUg -3'
miRNA:   3'- -ACAAGG-CGGGCGaGAGgGUgGCGGAa -5'
29519 5' -61.7 NC_006151.1 + 118711 0.68 0.487345
Target:  5'- ---aCgGCCCGCUCUgCCGCCuGCUg- -3'
miRNA:   3'- acaaGgCGGGCGAGAgGGUGG-CGGaa -5'
29519 5' -61.7 NC_006151.1 + 118341 0.69 0.42438
Target:  5'- ----gCGCCCGCcCUCUCGCgCGCCUg -3'
miRNA:   3'- acaagGCGGGCGaGAGGGUG-GCGGAa -5'
29519 5' -61.7 NC_006151.1 + 117899 0.69 0.43308
Target:  5'- --cUCCGCCUcuCUCUucacCCCGCCGCCg- -3'
miRNA:   3'- acaAGGCGGGc-GAGA----GGGUGGCGGaa -5'
29519 5' -61.7 NC_006151.1 + 114439 0.7 0.398919
Target:  5'- cUGgaCCGCCUGCUCggggCCugCGCCg- -3'
miRNA:   3'- -ACaaGGCGGGCGAGag--GGugGCGGaa -5'
29519 5' -61.7 NC_006151.1 + 113752 0.68 0.468883
Target:  5'- cUGUUcCCGCCgaaGCccaCUCCCgaGCCGCCUUc -3'
miRNA:   3'- -ACAA-GGCGGg--CGa--GAGGG--UGGCGGAA- -5'
29519 5' -61.7 NC_006151.1 + 112225 0.71 0.32145
Target:  5'- --gUCgCGCUCGCUCgUCgCCGCCGCCa- -3'
miRNA:   3'- acaAG-GCGGGCGAG-AG-GGUGGCGGaa -5'
29519 5' -61.7 NC_006151.1 + 109588 0.75 0.201547
Target:  5'- cGgcCCGCCCGCgcUCUucacCCCGCCGCCg- -3'
miRNA:   3'- aCaaGGCGGGCG--AGA----GGGUGGCGGaa -5'
29519 5' -61.7 NC_006151.1 + 109377 0.67 0.544612
Target:  5'- -cUUCCGCCCccGC-CgcaCCACCGCCg- -3'
miRNA:   3'- acAAGGCGGG--CGaGag-GGUGGCGGaa -5'
29519 5' -61.7 NC_006151.1 + 109283 0.67 0.540718
Target:  5'- ---gCCGCCCcCUCcgagaucgagcggCCCGCCGCCUc -3'
miRNA:   3'- acaaGGCGGGcGAGa------------GGGUGGCGGAa -5'
29519 5' -61.7 NC_006151.1 + 108276 0.66 0.623874
Target:  5'- aGgcCCGCCC-CUC-CaCCACCGUCUg -3'
miRNA:   3'- aCaaGGCGGGcGAGaG-GGUGGCGGAa -5'
29519 5' -61.7 NC_006151.1 + 108233 0.7 0.382498
Target:  5'- ---aCCGCCCGCccCUCcaCCACCGUCUg -3'
miRNA:   3'- acaaGGCGGGCGa-GAG--GGUGGCGGAa -5'
29519 5' -61.7 NC_006151.1 + 108179 0.66 0.603887
Target:  5'- ---cCCGCCCGCcCcCCCACCaCCg- -3'
miRNA:   3'- acaaGGCGGGCGaGaGGGUGGcGGaa -5'
29519 5' -61.7 NC_006151.1 + 107562 0.71 0.34121
Target:  5'- ---gCCGCCCGCcaagcccgcggagcUgaCUCCCGCCGCCa- -3'
miRNA:   3'- acaaGGCGGGCG--------------A--GAGGGUGGCGGaa -5'
29519 5' -61.7 NC_006151.1 + 107514 0.66 0.613874
Target:  5'- cGacCCGCCCaCgCUCCCGCCGUUg- -3'
miRNA:   3'- aCaaGGCGGGcGaGAGGGUGGCGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.