miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29520 3' -50.1 NC_006151.1 + 25 1.13 0.00622
Target:  5'- gCGAAAAAAGGGGGCGGGGCUUAAAGGg -3'
miRNA:   3'- -GCUUUUUUCCCCCGCCCCGAAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 29672 0.89 0.182583
Target:  5'- aGggGGGGGGGGGCGGGGU--GGGGGa -3'
miRNA:   3'- gCuuUUUUCCCCCGCCCCGaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 29354 0.86 0.267502
Target:  5'- gGggGAGAGGGGGCGGGGagc-GGGGc -3'
miRNA:   3'- gCuuUUUUCCCCCGCCCCgaauUUCC- -5'
29520 3' -50.1 NC_006151.1 + 27543 0.86 0.274172
Target:  5'- gGggGGGGGGGGGgGGGGCUgggcuGGGa -3'
miRNA:   3'- gCuuUUUUCCCCCgCCCCGAauu--UCC- -5'
29520 3' -50.1 NC_006151.1 + 33074 0.84 0.316997
Target:  5'- uGAGAcGGAGGGGGCGaGGGCgggcggUGGAGGg -3'
miRNA:   3'- gCUUU-UUUCCCCCGC-CCCGa-----AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 142540 0.84 0.34023
Target:  5'- gGGGAAAGGGGGGaacgaGGGGgUUGGGGGg -3'
miRNA:   3'- gCUUUUUUCCCCCg----CCCCgAAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 142358 0.83 0.356391
Target:  5'- gGGGAAAGGGGGGaacgaGGGGgUUGGGGGa -3'
miRNA:   3'- gCUUUUUUCCCCCg----CCCCgAAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 142410 0.83 0.356391
Target:  5'- gGGGAAAGGGGGGaacgaGGGGgUUGGGGGa -3'
miRNA:   3'- gCUUUUUUCCCCCg----CCCCgAAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 142462 0.83 0.356391
Target:  5'- gGGGAAAGGGGGGaacgaGGGGgUUGGGGGa -3'
miRNA:   3'- gCUUUUUUCCCCCg----CCCCgAAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 10375 0.83 0.381627
Target:  5'- gGAGGGGAGGGGGuCGGGGg--GAAGGg -3'
miRNA:   3'- gCUUUUUUCCCCC-GCCCCgaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 11800 0.82 0.426249
Target:  5'- gCGAGAGGGGcGGGGUGGGGU--GGGGGg -3'
miRNA:   3'- -GCUUUUUUC-CCCCGCCCCGaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 11724 0.81 0.464093
Target:  5'- aCGAGAGGGGGGaGCGGGGg-UGAGGGg -3'
miRNA:   3'- -GCUUUUUUCCCcCGCCCCgaAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 33156 0.8 0.513732
Target:  5'- gCGAGgcgGGucGGGGGCGGGGag-GAAGGg -3'
miRNA:   3'- -GCUU---UUuuCCCCCGCCCCgaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 33327 0.8 0.523926
Target:  5'- cCGGGAc-AGGGGGCgGGGGCggggAGAGGa -3'
miRNA:   3'- -GCUUUuuUCCCCCG-CCCCGaa--UUUCC- -5'
29520 3' -50.1 NC_006151.1 + 20126 0.79 0.575917
Target:  5'- aCGggGcuGGGGGGCGGGcGCcgcGGGGg -3'
miRNA:   3'- -GCuuUuuUCCCCCGCCC-CGaauUUCC- -5'
29520 3' -50.1 NC_006151.1 + 29199 0.78 0.597066
Target:  5'- gGAAAAAGGGGcgcGGCGGGGUggGGAuGGg -3'
miRNA:   3'- gCUUUUUUCCC---CCGCCCCGaaUUU-CC- -5'
29520 3' -50.1 NC_006151.1 + 26257 0.78 0.607686
Target:  5'- aGAGGGGAGGGGGagaGGGGCaaacgauGGGg -3'
miRNA:   3'- gCUUUUUUCCCCCg--CCCCGaauu---UCC- -5'
29520 3' -50.1 NC_006151.1 + 42172 0.78 0.618326
Target:  5'- -cAAAuGAGGGGGCGGGGCUa----- -3'
miRNA:   3'- gcUUUuUUCCCCCGCCCCGAauuucc -5'
29520 3' -50.1 NC_006151.1 + 27505 0.78 0.618326
Target:  5'- aCGggGugGGAGGGGGUgcgaugGGGGCgUGGGGGg -3'
miRNA:   3'- -GCuuU--UUUCCCCCG------CCCCGaAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 32839 0.78 0.639631
Target:  5'- aGAAAGAGGGGGGCcggcGGGGau--GGGGa -3'
miRNA:   3'- gCUUUUUUCCCCCG----CCCCgaauUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.