miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29520 3' -50.1 NC_006151.1 + 25 1.13 0.00622
Target:  5'- gCGAAAAAAGGGGGCGGGGCUUAAAGGg -3'
miRNA:   3'- -GCUUUUUUCCCCCGCCCCGAAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 1785 0.72 0.885499
Target:  5'- gGAGAGGAGGaGGGCcaccGGGCcggGGAGGc -3'
miRNA:   3'- gCUUUUUUCC-CCCGc---CCCGaa-UUUCC- -5'
29520 3' -50.1 NC_006151.1 + 1881 0.68 0.98134
Target:  5'- aGGAGGAGGacGGGGaCGGGGac--GAGGa -3'
miRNA:   3'- gCUUUUUUC--CCCC-GCCCCgaauUUCC- -5'
29520 3' -50.1 NC_006151.1 + 3821 0.66 0.996977
Target:  5'- uGGAcuu-GGugcuGGCGGGGCUgGAGGGc -3'
miRNA:   3'- gCUUuuuuCCc---CCGCCCCGAaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 5255 0.69 0.97401
Target:  5'- gCGggGGcccGGGGGGCGGagGGCgagcGGGc -3'
miRNA:   3'- -GCuuUUu--UCCCCCGCC--CCGaauuUCC- -5'
29520 3' -50.1 NC_006151.1 + 5790 0.69 0.971156
Target:  5'- ------cGGGGGaccaucuccGCGGGGCUgccGAGGGg -3'
miRNA:   3'- gcuuuuuUCCCC---------CGCCCCGAa--UUUCC- -5'
29520 3' -50.1 NC_006151.1 + 5844 0.67 0.988408
Target:  5'- cCGggGAggcugcgGAGGGGGacgagcgccCGGGGCcgccGGGGg -3'
miRNA:   3'- -GCuuUU-------UUCCCCC---------GCCCCGaau-UUCC- -5'
29520 3' -50.1 NC_006151.1 + 8064 0.7 0.944245
Target:  5'- aGggGAGccaagauggcgacGGGGcguGGCGGGGCguggcAGAGGg -3'
miRNA:   3'- gCuuUUU-------------UCCC---CCGCCCCGaa---UUUCC- -5'
29520 3' -50.1 NC_006151.1 + 8140 0.77 0.682089
Target:  5'- cCGGu--GGGGGGGCGGGuGC--AAAGGg -3'
miRNA:   3'- -GCUuuuUUCCCCCGCCC-CGaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 8484 0.67 0.989965
Target:  5'- uCGGucGGAcGGGGCGGG-CggGGAGGg -3'
miRNA:   3'- -GCUuuUUUcCCCCGCCCcGaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 8602 0.66 0.99581
Target:  5'- gCGAGuau-GGGGGCcGGuGCgggugUGAGGGu -3'
miRNA:   3'- -GCUUuuuuCCCCCGcCC-CGa----AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 9522 0.68 0.985283
Target:  5'- gGAAGGAAGaGGGGaCGGGG-----GGGa -3'
miRNA:   3'- gCUUUUUUC-CCCC-GCCCCgaauuUCC- -5'
29520 3' -50.1 NC_006151.1 + 9550 0.7 0.94471
Target:  5'- aGAAGAAAcGGGGaaGCGGGG---GAAGGa -3'
miRNA:   3'- gCUUUUUU-CCCC--CGCCCCgaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 9581 0.76 0.72383
Target:  5'- aCGggGAAGGGGGGaaagggaaaCGGGGaaacgggGAAGGg -3'
miRNA:   3'- -GCuuUUUUCCCCC---------GCCCCgaa----UUUCC- -5'
29520 3' -50.1 NC_006151.1 + 10041 0.7 0.943308
Target:  5'- aGGAAAAacGGGGGaGCGGGaGCggcucccgaguccggGAAGGa -3'
miRNA:   3'- gCUUUUU--UCCCC-CGCCC-CGaa-------------UUUCC- -5'
29520 3' -50.1 NC_006151.1 + 10092 0.66 0.995101
Target:  5'- gCGGAGGAAGGcGGGUGcGGa--GGAGGa -3'
miRNA:   3'- -GCUUUUUUCC-CCCGCcCCgaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 10231 0.66 0.99581
Target:  5'- gCGGAcgcGGAGGGGGGCGaGGGg------- -3'
miRNA:   3'- -GCUU---UUUUCCCCCGC-CCCgaauuucc -5'
29520 3' -50.1 NC_006151.1 + 10375 0.83 0.381627
Target:  5'- gGAGGGGAGGGGGuCGGGGg--GAAGGg -3'
miRNA:   3'- gCUUUUUUCCCCC-GCCCCgaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 10399 0.7 0.94471
Target:  5'- gGAGGGGGGGGGagaGCGGGGUgacgccgcGGGu -3'
miRNA:   3'- gCUUUUUUCCCC---CGCCCCGaauu----UCC- -5'
29520 3' -50.1 NC_006151.1 + 10451 0.71 0.939946
Target:  5'- aGGGAGGAGGaGGaggacGCGGcGGCggUGAAGGa -3'
miRNA:   3'- gCUUUUUUCC-CC-----CGCC-CCGa-AUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.