Results 21 - 40 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29520 | 3' | -50.1 | NC_006151.1 | + | 29281 | 0.67 | 0.991235 |
Target: 5'- uGAGuc-GGGaGGGUGGGGUggGAGcGGa -3' miRNA: 3'- gCUUuuuUCC-CCCGCCCCGaaUUU-CC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 34616 | 0.67 | 0.991235 |
Target: 5'- cCGAGcgcGAGGcgcGGGUGGGGCgaccgcGGGGg -3' miRNA: 3'- -GCUUuu-UUCC---CCCGCCCCGaau---UUCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 45318 | 0.67 | 0.991235 |
Target: 5'- cCGGGAGGcuGGGaGGGUGGcGGU--GGAGGa -3' miRNA: 3'- -GCUUUUU--UCC-CCCGCC-CCGaaUUUCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 8484 | 0.67 | 0.989965 |
Target: 5'- uCGGucGGAcGGGGCGGG-CggGGAGGg -3' miRNA: 3'- -GCUuuUUUcCCCCGCCCcGaaUUUCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 32595 | 0.67 | 0.988557 |
Target: 5'- gGAAGcggGAAGGGGaagcGCGGGGCg------ -3' miRNA: 3'- gCUUU---UUUCCCC----CGCCCCGaauuucc -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 5844 | 0.67 | 0.988408 |
Target: 5'- cCGggGAggcugcgGAGGGGGacgagcgccCGGGGCcgccGGGGg -3' miRNA: 3'- -GCuuUU-------UUCCCCC---------GCCCCGaau-UUCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 30158 | 0.68 | 0.986999 |
Target: 5'- gGAAAGAgagcgcGGGaGGGCGGGuGag-AGAGGu -3' miRNA: 3'- gCUUUUU------UCC-CCCGCCC-CgaaUUUCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 41501 | 0.68 | 0.986999 |
Target: 5'- gCGAGGGGAGccaauGGGGCGGGcGCcgcgGAGcGGa -3' miRNA: 3'- -GCUUUUUUC-----CCCCGCCC-CGaa--UUU-CC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 23424 | 0.68 | 0.985283 |
Target: 5'- cCGGccgu-GGGGGCGauGGGUggGAGGGu -3' miRNA: 3'- -GCUuuuuuCCCCCGC--CCCGaaUUUCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 27476 | 0.68 | 0.985283 |
Target: 5'- uCGAGcgGGGGGucGGCGGGGUggU--GGGa -3' miRNA: 3'- -GCUUuuUUCCC--CCGCCCCGa-AuuUCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 9522 | 0.68 | 0.985283 |
Target: 5'- gGAAGGAAGaGGGGaCGGGG-----GGGa -3' miRNA: 3'- gCUUUUUUC-CCCC-GCCCCgaauuUCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 41935 | 0.68 | 0.9834 |
Target: 5'- aGAuu--AGGGGGaGGGGUuaugcagaUUAGGGGg -3' miRNA: 3'- gCUuuuuUCCCCCgCCCCG--------AAUUUCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 41979 | 0.68 | 0.9834 |
Target: 5'- aGAuu--AGGGGGaGGGGUuaugcagaUUAGGGGg -3' miRNA: 3'- gCUuuuuUCCCCCgCCCCG--------AAUUUCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 46042 | 0.68 | 0.98134 |
Target: 5'- gGGGAAGAGGaugagccgguaGGGgGGGGCUUcgcGGu -3' miRNA: 3'- gCUUUUUUCC-----------CCCgCCCCGAAuuuCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 1881 | 0.68 | 0.98134 |
Target: 5'- aGGAGGAGGacGGGGaCGGGGac--GAGGa -3' miRNA: 3'- gCUUUUUUC--CCCC-GCCCCgaauUUCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 29391 | 0.68 | 0.98134 |
Target: 5'- aGAGGAGAGGaGaGGCGGGaccgcGCggaGAAGGc -3' miRNA: 3'- gCUUUUUUCC-C-CCGCCC-----CGaa-UUUCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 43927 | 0.68 | 0.98134 |
Target: 5'- aGAGAGAGGaGGGagaGGGGCc--GGGGg -3' miRNA: 3'- gCUUUUUUCcCCCg--CCCCGaauUUCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 17275 | 0.68 | 0.979093 |
Target: 5'- -------cGGGGGC-GGGCUgauacgGAGGGg -3' miRNA: 3'- gcuuuuuuCCCCCGcCCCGAa-----UUUCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 16490 | 0.69 | 0.976653 |
Target: 5'- nGGAGAGGGGaguGGGaUGGGGUggagacggUGGAGGg -3' miRNA: 3'- gCUUUUUUCC---CCC-GCCCCGa-------AUUUCC- -5' |
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29520 | 3' | -50.1 | NC_006151.1 | + | 16455 | 0.69 | 0.976653 |
Target: 5'- nGGAGAGGGGaguGGGaUGGGGUggagacggUGGAGGg -3' miRNA: 3'- gCUUUUUUCC---CCC-GCCCCGa-------AUUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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