miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29520 3' -50.1 NC_006151.1 + 29281 0.67 0.991235
Target:  5'- uGAGuc-GGGaGGGUGGGGUggGAGcGGa -3'
miRNA:   3'- gCUUuuuUCC-CCCGCCCCGaaUUU-CC- -5'
29520 3' -50.1 NC_006151.1 + 34616 0.67 0.991235
Target:  5'- cCGAGcgcGAGGcgcGGGUGGGGCgaccgcGGGGg -3'
miRNA:   3'- -GCUUuu-UUCC---CCCGCCCCGaau---UUCC- -5'
29520 3' -50.1 NC_006151.1 + 45318 0.67 0.991235
Target:  5'- cCGGGAGGcuGGGaGGGUGGcGGU--GGAGGa -3'
miRNA:   3'- -GCUUUUU--UCC-CCCGCC-CCGaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 8484 0.67 0.989965
Target:  5'- uCGGucGGAcGGGGCGGG-CggGGAGGg -3'
miRNA:   3'- -GCUuuUUUcCCCCGCCCcGaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 32595 0.67 0.988557
Target:  5'- gGAAGcggGAAGGGGaagcGCGGGGCg------ -3'
miRNA:   3'- gCUUU---UUUCCCC----CGCCCCGaauuucc -5'
29520 3' -50.1 NC_006151.1 + 5844 0.67 0.988408
Target:  5'- cCGggGAggcugcgGAGGGGGacgagcgccCGGGGCcgccGGGGg -3'
miRNA:   3'- -GCuuUU-------UUCCCCC---------GCCCCGaau-UUCC- -5'
29520 3' -50.1 NC_006151.1 + 30158 0.68 0.986999
Target:  5'- gGAAAGAgagcgcGGGaGGGCGGGuGag-AGAGGu -3'
miRNA:   3'- gCUUUUU------UCC-CCCGCCC-CgaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 41501 0.68 0.986999
Target:  5'- gCGAGGGGAGccaauGGGGCGGGcGCcgcgGAGcGGa -3'
miRNA:   3'- -GCUUUUUUC-----CCCCGCCC-CGaa--UUU-CC- -5'
29520 3' -50.1 NC_006151.1 + 23424 0.68 0.985283
Target:  5'- cCGGccgu-GGGGGCGauGGGUggGAGGGu -3'
miRNA:   3'- -GCUuuuuuCCCCCGC--CCCGaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 27476 0.68 0.985283
Target:  5'- uCGAGcgGGGGGucGGCGGGGUggU--GGGa -3'
miRNA:   3'- -GCUUuuUUCCC--CCGCCCCGa-AuuUCC- -5'
29520 3' -50.1 NC_006151.1 + 9522 0.68 0.985283
Target:  5'- gGAAGGAAGaGGGGaCGGGG-----GGGa -3'
miRNA:   3'- gCUUUUUUC-CCCC-GCCCCgaauuUCC- -5'
29520 3' -50.1 NC_006151.1 + 41935 0.68 0.9834
Target:  5'- aGAuu--AGGGGGaGGGGUuaugcagaUUAGGGGg -3'
miRNA:   3'- gCUuuuuUCCCCCgCCCCG--------AAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 41979 0.68 0.9834
Target:  5'- aGAuu--AGGGGGaGGGGUuaugcagaUUAGGGGg -3'
miRNA:   3'- gCUuuuuUCCCCCgCCCCG--------AAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 46042 0.68 0.98134
Target:  5'- gGGGAAGAGGaugagccgguaGGGgGGGGCUUcgcGGu -3'
miRNA:   3'- gCUUUUUUCC-----------CCCgCCCCGAAuuuCC- -5'
29520 3' -50.1 NC_006151.1 + 1881 0.68 0.98134
Target:  5'- aGGAGGAGGacGGGGaCGGGGac--GAGGa -3'
miRNA:   3'- gCUUUUUUC--CCCC-GCCCCgaauUUCC- -5'
29520 3' -50.1 NC_006151.1 + 29391 0.68 0.98134
Target:  5'- aGAGGAGAGGaGaGGCGGGaccgcGCggaGAAGGc -3'
miRNA:   3'- gCUUUUUUCC-C-CCGCCC-----CGaa-UUUCC- -5'
29520 3' -50.1 NC_006151.1 + 43927 0.68 0.98134
Target:  5'- aGAGAGAGGaGGGagaGGGGCc--GGGGg -3'
miRNA:   3'- gCUUUUUUCcCCCg--CCCCGaauUUCC- -5'
29520 3' -50.1 NC_006151.1 + 17275 0.68 0.979093
Target:  5'- -------cGGGGGC-GGGCUgauacgGAGGGg -3'
miRNA:   3'- gcuuuuuuCCCCCGcCCCGAa-----UUUCC- -5'
29520 3' -50.1 NC_006151.1 + 16490 0.69 0.976653
Target:  5'- nGGAGAGGGGaguGGGaUGGGGUggagacggUGGAGGg -3'
miRNA:   3'- gCUUUUUUCC---CCC-GCCCCGa-------AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 16455 0.69 0.976653
Target:  5'- nGGAGAGGGGaguGGGaUGGGGUggagacggUGGAGGg -3'
miRNA:   3'- gCUUUUUUCC---CCC-GCCCCGa-------AUUUCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.