miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29520 5' -56.3 NC_006151.1 + 38008 0.66 0.86475
Target:  5'- aGCGccUGCu--GCCCUGCCCgCUCc -3'
miRNA:   3'- aUGUaaACGuauCGGGGCGGGgGAGu -5'
29520 5' -56.3 NC_006151.1 + 99144 0.66 0.823679
Target:  5'- cGCAggccgUGCAcgUGGCCgCCGCCgcggaCCUCGa -3'
miRNA:   3'- aUGUaa---ACGU--AUCGG-GGCGGg----GGAGU- -5'
29520 5' -56.3 NC_006151.1 + 118684 0.66 0.823679
Target:  5'- --aGUUUGUGUA-CCCgCGCCCCUUCu -3'
miRNA:   3'- augUAAACGUAUcGGG-GCGGGGGAGu -5'
29520 5' -56.3 NC_006151.1 + 118332 0.66 0.832289
Target:  5'- aGCA---GCGccGCgCCCGCCCUCUCGc -3'
miRNA:   3'- aUGUaaaCGUauCG-GGGCGGGGGAGU- -5'
29520 5' -56.3 NC_006151.1 + 38694 0.66 0.840709
Target:  5'- ------cGCA-AGCgCCGCUCCCUCGg -3'
miRNA:   3'- auguaaaCGUaUCGgGGCGGGGGAGU- -5'
29520 5' -56.3 NC_006151.1 + 48766 0.66 0.848117
Target:  5'- cACGgggGCcgAcgccuccGCCCCGCCCCC-CGa -3'
miRNA:   3'- aUGUaaaCGuaU-------CGGGGCGGGGGaGU- -5'
29520 5' -56.3 NC_006151.1 + 58942 0.66 0.84893
Target:  5'- aGCGcc-GCAaAGUCCacgGCCCCCUCGg -3'
miRNA:   3'- aUGUaaaCGUaUCGGGg--CGGGGGAGU- -5'
29520 5' -56.3 NC_006151.1 + 97706 0.66 0.84893
Target:  5'- uUGCGUca-CGUGGCCCaggaGCCCCC-CGa -3'
miRNA:   3'- -AUGUAaacGUAUCGGGg---CGGGGGaGU- -5'
29520 5' -56.3 NC_006151.1 + 89345 0.66 0.84893
Target:  5'- gGCGcgUGCGaaUGGCCCCccGUCCCCcCAu -3'
miRNA:   3'- aUGUaaACGU--AUCGGGG--CGGGGGaGU- -5'
29520 5' -56.3 NC_006151.1 + 108434 0.66 0.84893
Target:  5'- ------gGCGggAGCCgccuccccgggCCGCCCCCUCGa -3'
miRNA:   3'- auguaaaCGUa-UCGG-----------GGCGGGGGAGU- -5'
29520 5' -56.3 NC_006151.1 + 121465 0.66 0.856946
Target:  5'- aGCugggggGCA-AGCgCCCGCCCCCg-- -3'
miRNA:   3'- aUGuaaa--CGUaUCG-GGGCGGGGGagu -5'
29520 5' -56.3 NC_006151.1 + 7004 0.67 0.778076
Target:  5'- cUAC-UUUGCAU-GUCCgGCCCCCg-- -3'
miRNA:   3'- -AUGuAAACGUAuCGGGgCGGGGGagu -5'
29520 5' -56.3 NC_006151.1 + 91801 0.67 0.778076
Target:  5'- uUAUAUgcGCGggauGCCCCGCCCCg--- -3'
miRNA:   3'- -AUGUAaaCGUau--CGGGGCGGGGgagu -5'
29520 5' -56.3 NC_006151.1 + 36750 0.67 0.787507
Target:  5'- cGCuug-GCGcccggAGCCCCGUCUCCUCc -3'
miRNA:   3'- aUGuaaaCGUa----UCGGGGCGGGGGAGu -5'
29520 5' -56.3 NC_006151.1 + 12906 0.67 0.796793
Target:  5'- ------cGCu---CCCCGCCCCCUCu -3'
miRNA:   3'- auguaaaCGuaucGGGGCGGGGGAGu -5'
29520 5' -56.3 NC_006151.1 + 8360 0.67 0.796793
Target:  5'- cGCGgagGCGcgaGGcCCCCGCCCCCg-- -3'
miRNA:   3'- aUGUaaaCGUa--UC-GGGGCGGGGGagu -5'
29520 5' -56.3 NC_006151.1 + 11928 0.67 0.796793
Target:  5'- ------cGCGccGCCgCCGCCUCCUCAu -3'
miRNA:   3'- auguaaaCGUauCGG-GGCGGGGGAGU- -5'
29520 5' -56.3 NC_006151.1 + 18439 0.67 0.796793
Target:  5'- gGCGg--GCGUcG-CCCGCCUCCUCGu -3'
miRNA:   3'- aUGUaaaCGUAuCgGGGCGGGGGAGU- -5'
29520 5' -56.3 NC_006151.1 + 344 0.67 0.805922
Target:  5'- -----cUGCAUAaCCCCucCCCCCUCAu -3'
miRNA:   3'- auguaaACGUAUcGGGGc-GGGGGAGU- -5'
29520 5' -56.3 NC_006151.1 + 40404 0.67 0.805922
Target:  5'- cUGCGUccGCGgcggcGGCCUCgGUCCCCUCGg -3'
miRNA:   3'- -AUGUAaaCGUa----UCGGGG-CGGGGGAGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.