miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29520 5' -56.3 NC_006151.1 + 78 1.07 0.002724
Target:  5'- aUACAUUUGCAUAGCCCCGCCCCCUCAu -3'
miRNA:   3'- -AUGUAAACGUAUCGGGGCGGGGGAGU- -5'
29520 5' -56.3 NC_006151.1 + 106 0.81 0.155082
Target:  5'- uUGCAUaaaUUaGCAUGGCCCCuCCCCCUCAu -3'
miRNA:   3'- -AUGUA---AA-CGUAUCGGGGcGGGGGAGU- -5'
29520 5' -56.3 NC_006151.1 + 142 0.77 0.276839
Target:  5'- aUGCAUUUGCAUAaCCCCuCCCCCUg- -3'
miRNA:   3'- -AUGUAAACGUAUcGGGGcGGGGGAgu -5'
29520 5' -56.3 NC_006151.1 + 170 0.7 0.625678
Target:  5'- -----cUGCAUAaCCCCaCCCCCUCAu -3'
miRNA:   3'- auguaaACGUAUcGGGGcGGGGGAGU- -5'
29520 5' -56.3 NC_006151.1 + 196 1.02 0.005861
Target:  5'- aUACAUUUGCAUAGCCCCGCCCCUUCAu -3'
miRNA:   3'- -AUGUAAACGUAUCGGGGCGGGGGAGU- -5'
29520 5' -56.3 NC_006151.1 + 344 0.67 0.805922
Target:  5'- -----cUGCAUAaCCCCucCCCCCUCAu -3'
miRNA:   3'- auguaaACGUAUcGGGGc-GGGGGAGU- -5'
29520 5' -56.3 NC_006151.1 + 6840 0.76 0.311782
Target:  5'- -cCAUUUGCAU-GCCCgGCCCCCg-- -3'
miRNA:   3'- auGUAAACGUAuCGGGgCGGGGGagu -5'
29520 5' -56.3 NC_006151.1 + 6923 0.68 0.769471
Target:  5'- cUAC-UUUGCAUguccGGCCCCGagggcgccaucuuggCCCCUCGa -3'
miRNA:   3'- -AUGuAAACGUA----UCGGGGCg--------------GGGGAGU- -5'
29520 5' -56.3 NC_006151.1 + 7004 0.67 0.778076
Target:  5'- cUAC-UUUGCAU-GUCCgGCCCCCg-- -3'
miRNA:   3'- -AUGuAAACGUAuCGGGgCGGGGGagu -5'
29520 5' -56.3 NC_006151.1 + 7088 0.7 0.615222
Target:  5'- --gAUUUGCAU-GCCCgGCCCgCUCu -3'
miRNA:   3'- augUAAACGUAuCGGGgCGGGgGAGu -5'
29520 5' -56.3 NC_006151.1 + 7253 0.72 0.492847
Target:  5'- -uCAUUUGCAUGcucGCCCCacgugGCCgCCCUCGg -3'
miRNA:   3'- auGUAAACGUAU---CGGGG-----CGG-GGGAGU- -5'
29520 5' -56.3 NC_006151.1 + 8360 0.67 0.796793
Target:  5'- cGCGgagGCGcgaGGcCCCCGCCCCCg-- -3'
miRNA:   3'- aUGUaaaCGUa--UC-GGGGCGGGGGagu -5'
29520 5' -56.3 NC_006151.1 + 11928 0.67 0.796793
Target:  5'- ------cGCGccGCCgCCGCCUCCUCAu -3'
miRNA:   3'- auguaaaCGUauCGG-GGCGGGGGAGU- -5'
29520 5' -56.3 NC_006151.1 + 12906 0.67 0.796793
Target:  5'- ------cGCu---CCCCGCCCCCUCu -3'
miRNA:   3'- auguaaaCGuaucGGGGCGGGGGAGu -5'
29520 5' -56.3 NC_006151.1 + 14023 0.69 0.688223
Target:  5'- --aAUggGCccgucGGCCCgGCCCCCUCGa -3'
miRNA:   3'- augUAaaCGua---UCGGGgCGGGGGAGU- -5'
29520 5' -56.3 NC_006151.1 + 18439 0.67 0.796793
Target:  5'- gGCGg--GCGUcG-CCCGCCUCCUCGu -3'
miRNA:   3'- aUGUaaaCGUAuCgGGGCGGGGGAGU- -5'
29520 5' -56.3 NC_006151.1 + 34100 0.69 0.698531
Target:  5'- -cCAUUUug--GGCCCCGCCCCUUUg -3'
miRNA:   3'- auGUAAAcguaUCGGGGCGGGGGAGu -5'
29520 5' -56.3 NC_006151.1 + 36750 0.67 0.787507
Target:  5'- cGCuug-GCGcccggAGCCCCGUCUCCUCc -3'
miRNA:   3'- aUGuaaaCGUa----UCGGGGCGGGGGAGu -5'
29520 5' -56.3 NC_006151.1 + 38008 0.66 0.86475
Target:  5'- aGCGccUGCu--GCCCUGCCCgCUCc -3'
miRNA:   3'- aUGUaaACGuauCGGGGCGGGgGAGu -5'
29520 5' -56.3 NC_006151.1 + 38694 0.66 0.840709
Target:  5'- ------cGCA-AGCgCCGCUCCCUCGg -3'
miRNA:   3'- auguaaaCGUaUCGgGGCGGGGGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.